Gene omics information

Query gene ID	Contig16765_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	89.1	Contig16765_at	Contig16765	-	-	2e-2	At3g54090	pfkB-type carbohydrate kinase family protein	S.X.	H.G.	Please select
0.37	47.9	Contig18751_at	Contig18751	-	-	2e+0	At2g18721	unknown protein	S.X.	H.G.	Please select
0.34	43.6	Contig223_s_at	Contig223	-	-	8e-1	At5g56900	CwfJ-like family protein / zinc finger (CCCH-type) family protein	S.X.	H.G.	Please select
0.32	40.3	HY02G07u_at	HY02G07u	-	-	4e+0	At2g28420	lactoylglutathione lyase family protein / glyoxalase I family protein	S.X.	H.G.	Please select
0.32	40.3	HW06C04u_s_at	HW06C04u	-	-	7e+0	At3g05980	unknown protein	S.X.	H.G.	Please select
0.31	38.6	HVSMEh0085G19f_at	HVSMEh0085G19f	-	-	3e+0	At1g75510	transcription initiation factor IIF beta subunit (TFIIF-beta) family protein	S.X.	H.G.	Please select
0.29	35.5	Contig4494_x_at	Contig4494	-	-	5e+0	At5g55508	unknown protein	S.X.	H.G.	Please select
0.29	35.5	Contig19668_at	Contig19668	-	-	1e-1	At5g47610	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.29	35.5	Contig18846_at	Contig18846	-	-	4e+0	At3g27831	-	S.X.	H.G.	Please select
0.26	30.4	Contig23122_at	Contig23122	-	-	5e+0	At1g71080	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.7	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.2	97.4	GSM372940	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.1	97.3	GSM372938	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.0	97.2	GSM372970	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM372959	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM68897	8 h control replicate 3	GSE3097	Barley1 salinity stress study
4.6	96.8	GSM261052	Bonus Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3	96.4	GSM68900	8 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study
4.3	96.4	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	2e-124	444	Contig16766_at	Contig16766	-	-	1e+0	At1g73530	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	1e-1	36	Contig2173_s_at	Contig2173	-	-	8e-6	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig8779_at	Contig8779	-	-	1e+1	At5g05930	guanylyl cyclase-related (GC1)	C.G.	S.X.	Please select
0.01	1e-1	36	Contig6214_at	Contig6214	-	-	2e-1	At3g50930	BCS1 (CYTOCHROME BC1 SYNTHESIS)	C.G.	S.X.	Please select
0.01	1e-1	36	Contig4499_s_at	Contig4499	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig7377_s_at	Contig7377	-	-	1e-1	At2g25810	TIP4	C.G.	S.X.	Please select
0.02	6e-1	34	Contig9160_s_at	Contig9160	-	-	1e-41	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig9160_at	Contig9160	-	-	1e-41	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig7203_at	Contig7203	-	-	2e-7	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	Arabidopsis thaliana	At3g54090	824576	pfkB-type carbohydrate kinase family protein	F:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleus, chloroplast, nucleoid, cytoplasm;BOPAMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.CL704Contig1_at	PsAffx.CL704Contig1	-	-	5e+0	At5g26790	unknown protein	C.G.	S.X.	Please select
0.09	1e-5	52	Oryza sativa	Os01g0931600	9629.m06975	-	-	2e-2	At3g14260	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.214133.1.S1_at	pmrna27503	hypothetical protein	-	1e+0	At5g51120	PABN1 (POLYADENYLATE-BINDING PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	2e-95	349	Triticum aestivum	TaAffx.29251.1.S1_at	CA647097	-	-	2e+0	At3g14260	unknown protein	C.G.	S.X.	Please select
0.03	9e-2	36	Vitis vinifera	1618031_s_at	CF404451	hypothetical protein LOC100243967	-	2e-12	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.16904.2.A1_a_at	BM381185	-	-	6e+0	At5g57565	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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