Gene omics information

Query gene ID	Contig16664_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.38	49.5	Contig16664_at	Contig16664	-	-	3e-8	At1g73180	eukaryotic translation initiation factor-related	S.X.	H.G.	Please select
0.77	90.8	Contig1760_s_at	Contig1760	-	-	2e-9	At1g09340	CRB (CHLOROPLAST RNA BINDING)	S.X.	H.G.	Please select
0.73	88.7	Contig11673_at	Contig11673	-	-	7e-8	At2g35720	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.71	87.1	Contig15463_at	Contig15463	-	-	5e+0	At5g11930	glutaredoxin family protein	S.X.	H.G.	Please select
0.61	78.7	Contig11731_at	Contig11731	-	-	2e-10	At3g02450	cell division protein ftsH, putative	S.X.	H.G.	Please select
0.60	77.3	Contig26395_at	Contig26395	-	-	5e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	S.X.	H.G.	Please select
0.42	55.2	Contig841_x_at	Contig841	-	-	1e-35	At2g34420	LHB1B2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.2	99.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.0	98.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.0	98.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0	97.2	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.8	97.0	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	6e-42	171	Contig14234_at	Contig14234	-	-	4e-1	At1g50570	C2 domain-containing protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig8132_s_at	Contig8132	-	-	4e-8	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig8132_at	Contig8132	-	-	4e-8	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	C.G.	S.X.	Please select
0.02	9e-1	34	HS05B02u_at	HS05B02u	-	-	3e-10	At4g14240	-	C.G.	S.X.	Please select
0.02	9e-1	34	HS05B02u_s_at	HS05B02u	-	-	3e-10	At4g14240	-	C.G.	S.X.	Please select
0.02	9e-1	34	Contig3624_at	Contig3624	-	-	6e-1	At3g18540	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig12450_at	Contig12450	-	-	2e+0	At5g58370	GTP binding	C.G.	S.X.	Please select
0.01	9e-1	34	Contig11796_at	Contig11796	-	-	9e-35	At4g14240	-	C.G.	S.X.	Please select
0.03	4e+0	32	HU03N08u_s_at	HU03N08u	-	-	4e-6	At2g22480	PFK5 (PHOSPHOFRUCTOKINASE 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-8	59	Arabidopsis thaliana	At1g73180	843652	eukaryotic translation initiation factor-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFOPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	8e-13	75	Glycine max	GmaAffx.9751.1.S1_at	BM107722	-	-	2e-25	At1g73180	eukaryotic translation initiation factor-related	C.G.	S.X.	Please select
0.58	6e-153	541	Oryza sativa	Os02g0606100	AU162342	-	Quinoprotein amine dehydrogenase, beta chain-likedomain containing protein	6e-7	At1g73180	eukaryotic translation initiation factor-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	2e-16	87	Populus trichocarpa	Ptp.6806.1.S1_at	CV274320	-	-	3e-24	At1g73180	eukaryotic translation initiation factor-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	0	656	Triticum aestivum	Ta.30734.3.S1_a_at	CA704391	-	-	2e-8	At1g73180	eukaryotic translation initiation factor-related	C.G.	S.X.	Please select
0.07	4e-17	87	Vitis vinifera	1612986_at	CB348805	hypothetical protein LOC100249064	-	5e-16	At1g73180	eukaryotic translation initiation factor-related	C.G.	S.X.	Please select
0.32	8e-35	147	Zea mays	Zm.14711.1.A1_at	CF625292	-	-	2e-10	At1g73180	eukaryotic translation initiation factor-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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