Gene omics information

Query gene ID	Contig16630_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.9	Contig16630_at	Contig16630	-	-	1e+0	At1g31250	proline-rich family protein	S.X.	H.G.	Please select
0.38	49.5	Contig5510_s_at	Contig5510	-	-	1e-1	At5g04250	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.38	49.5	Contig4647_at	Contig4647	-	-	3e-3	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	S.X.	H.G.	Please select
0.36	47.1	Contig13674_at	Contig13674	-	-	2e+0	At5g17073	unknown protein	S.X.	H.G.	Please select
0.20	21.1	HA31E10r_s_at	HA31E10r	-	-	1e+0	At4g15620	integral membrane family protein	S.X.	H.G.	Please select
0.17	16.9	Contig12816_at	Contig12816	-	-	1e-4	At4g08455	BTB/POZ domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	97.4	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.3	94.6	GSM363467	10 mM B(OH)3 treatment (10B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
3.3	94.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
2.8	93.1	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	7e-1	34	Contig7838_at	Contig7838	-	-	3e-41	At4g00370	ANTR2	C.G.	S.X.	Please select
0.02	7e-1	34	Contig7148_at	Contig7148	-	-	5e-2	At2g28910	CXIP4 (CAX INTERACTING PROTEIN 4)	C.G.	S.X.	Please select
0.01	7e-1	34	Contig3232_at	Contig3232	-	-	1e-37	At2g44350	ATCS	C.G.	S.X.	Please select
0.03	7e-1	34	Contig16388_at	Contig16388	-	-	2e+0	At1g05385	photosystem II 11 kDa protein-related	C.G.	S.X.	Please select
0.03	7e-1	34	Contig15665_at	Contig15665	-	-	1e+0	At1g16390	ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3)	C.G.	S.X.	Please select
0.03	3e+0	32	HVSMEg0005F20r2_at	HVSMEg0005F20r2	-	-	8e-1	At2g01175	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig5116_at	Contig5116	-	-	6e-15	At2g18740	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Contig23228_at	Contig23228	-	-	4e-7	At1g05170	galactosyltransferase family protein	C.G.	S.X.	Please select
0.04	3e+0	32	EBpi03_SQ003_N16_at	EBpi03_SQ003_N16	-	-	2e-1	At2g28910	CXIP4 (CAX INTERACTING PROTEIN 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g31250	840013	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	GmaAffx.70526.1.A1_at	CD404493	-	-	7e-1	At5g53560	CB5-E (CYTOCHROME B5 ISOFORM E)	C.G.	S.X.	Please select
0.07	3e-6	54	Oryza sativa	Os.17836.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.37656.1.A1_at	CV243316	-	-	4e+0	At4g21560	VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e-1	36	Triticum aestivum	Ta.5437.3.S1_a_at	CA677043	-	-	8e-1	At1g37140	MCT1 (mei2 C-Terminal RRM only like 1)	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1621104_at	CF568790	-	-	7e-1	At5g21140	emb1379 (embryo defective 1379)	C.G.	S.X.	Please select
0.03	2e-6	52	Zea mays	Zm.2831.1.A1_at	AW066991	-	-	2e+0	At3g60760	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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