Gene omics information

Query gene ID	Contig16555_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig16555_at	Contig16555	-	-	6e-3	At3g12685	-	S.X.	H.G.	Please select
0.83	94.0	Contig13544_at	Contig13544	-	-	5e-2	At1g19300	PARVUS (PARVUS)	S.X.	H.G.	Please select
0.50	66.9	Contig9526_at	Contig9526	-	-	2e-6	At4g34040	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.35	45.1	HV_CEa0006M01r2_at	HV_CEa0006M01r2	-	-	3e-1	At2g27750	nucleolar matrix protein-related	S.X.	H.G.	Please select
0.22	24.2	Contig6370_at	Contig6370	-	-	9e-9	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	S.X.	H.G.	Please select
0.19	19.6	Contig11675_at	Contig11675	-	-	2e-10	At1g48650	helicase domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.2	99.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.9	99.3	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.7	98.6	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.8	98.3	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
5.7	97.7	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4	97.5	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
5.2	97.4	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
5.1	97.3	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.7	96.9	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
4.5	96.7	GSM372941	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-8	57	Contig8408_at	Contig8408	-	-	5e-20	At1g43130	LCV2 (LIKE COV 2)	C.G.	S.X.	Please select
0.03	2e-4	46	Contig18302_at	Contig18302	-	-	6e-1	At4g02440	EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1)	C.G.	S.X.	Please select
0.02	7e-4	44	Contig9211_at	Contig9211	-	-	9e-10	At5g18640	lipase class 3 family protein	C.G.	S.X.	Please select
0.04	3e-3	42	EBro08_SQ005_A14_at	EBro08_SQ005_A14	-	-	4e+0	At3g28674	unknown protein	C.G.	S.X.	Please select
0.02	3e-3	42	Contig3878_at	Contig3878	-	-	9e-6	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select
0.03	3e-3	42	Contig16332_at	Contig16332	-	-	3e-1	At5g41560	-	C.G.	S.X.	Please select
0.04	3e-3	42	Contig13044_at	Contig13044	-	-	4e-1	At1g56190	phosphoglycerate kinase, putative	C.G.	S.X.	Please select
0.03	1e-2	40	Contig17566_at	Contig17566	-	-	4e-2	At4g11060	MTSSB (mitochondrially targeted single-stranded DNA binding protein)	C.G.	S.X.	Please select
0.02	4e-2	38	Contig14769_at	Contig14769	-	-	8e-1	At3g21830	ASK8 (ARABIDOPSIS SKP1-LIKE 8)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	6e-3	42	Arabidopsis thaliana	At3g12685	820449	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.C156000032_at	PsAffx.C156000032	-	-	4e+0	At5g19875	unknown protein	C.G.	S.X.	Please select
0.38	4e-42	173	Oryza sativa	Os06g0530300	9634.m03187	-	Protein of unknown function DUF212 family protein	2e-3	At3g12685	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	5e-4	46	Populus trichocarpa	PtpAffx.209215.1.S1_at	pmrna18221	hypothetical protein	-	3e-16	At3g12685	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	6e-37	155	Triticum aestivum	Ta.26875.1.A1_at	CD491543	-	-	8e-2	At3g12685	-	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1622478_at	CD713840	-	-	1e+0	At2g30460	-	C.G.	S.X.	Please select
0.02	6e-1	34	Zea mays	Zm.6992.1.A1_at	AY105449.1	16kDa membrane protein	-	5e-7	At1g08380	PSAO (photosystem I subunit O)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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