Gene omics information

Query gene ID Contig1648_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6077.3Contig1648_atContig1648--3e-18At1g66200ATGSR2S.X.H.G.
0.7388.7HB25K17r_atHB25K17r--2e+0At4g09260unknown proteinS.X.H.G.
0.5066.9Contig18921_atContig18921--1e+0At1g49520SWIB complex BAF60b domain-containing proteinS.X.H.G.
0.4762.2Contig12570_atContig12570--5e-29At3g53570AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)S.X.H.G.
0.3342.6Contig14990_atContig14990isoamylase-8e-25At4g09020ISA3 (ISOAMYLASE 3)S.X.H.G.
0.3342.6HVSMEn0017F07r2_atHVSMEn0017F07r2--3e-7At1g78560bile acid:sodium symporter family proteinS.X.H.G.
0.1716.9Contig8408_atContig8408--5e-20At1g43130LCV2 (LIKE COV 2)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
59.3100.0GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
33.399.9GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
32.799.9GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
14.099.5GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
12.599.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
9.999.1GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
8.798.9GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seeds
8.598.8GSM282035Malting_day4_Morex_rep1GSE11200Expression data from malting barley seeds
8.298.7GSM1611487% SWC rep3GSE6990Barley drought stress
7.898.6GSM238421Endosperm 0 h; Seed germination Rep 2GSE9365Expression data from barley maturing and germinating grains
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.516e-154543Contig1646_s_atContig1646--9e-19At5g37600ATGSR1C.G.S.X.
0.516e-154543Contig1646_atContig1646--9e-19At5g37600ATGSR1C.G.S.X.
0.106e-1581HS09M17u_s_atHS09M17u--1e+0At5g05380PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)C.G.S.X.
0.016e-342Contig3520_atContig3520--1e-21At1g23800ALDH2B7C.G.S.X.
0.029e-238Contig11814_atContig11814--2e+0At5g44300dormancy/auxin associated family proteinC.G.S.X.
0.019e-238Contig1391_atContig1391--0At5g09810ACT7 (ACTIN 7)C.G.S.X.
0.013e-136Contig12351_atContig12351--1e-6At1g55270kelch repeat-containing F-box family proteinC.G.S.X.
0.023e-136HVSMEc0001A03r2_atHVSMEc0001A03r2--3e+0At3g52690-C.G.S.X.
0.013e-136Contig17959_atContig17959--7e-1At4g27240zinc finger (C2H2 type) family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.383e-1893Arabidopsis thalianaAt1g66200842935ATGSR2encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium---C.G.S.X.
0.312e-23111Glycine maxGma.3518.1.S1_atAF301590.1glutamate--ammonia ligase-2e-109At5g37600ATGSR1C.G.S.X.
0.590886Oryza sativaOs03g0712800AK063913.1-Glutamine synthetase root isozyme 2 (EC 6.3.1.2)(Glutamate--ammonia ligase)4e-18At5g37600ATGSR1C.G.S.X.
0.325e-27123Populus trichocarpaPtp.2573.1.S1_atCV237401hypothetical protein-1e-95At5g37600ATGSR1C.G.S.X.
0.7901758Triticum aestivumTaAffx.143995.4.S1_s_atAY491970--1e-23At5g37600ATGSR1C.G.S.X.
0.424e-24111Vitis vinifera1609819_s_atCF209842glutamine synthetase-5e-42At3g17820ATGSKB6C.G.S.X.
0.6201015Zea maysZm.107.1.S1_atAY104270.1glutamine synthetase2-2e-17At3g17820ATGSKB6C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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