CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig16483_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig16483_at Contig16483 - - 8e-3 At4g39640 GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) S.X. H.G.
0.83 94.0 HM04K08u_s_at HM04K08u - - 9e-1 At1g65000 unknown protein S.X. H.G.
0.83 94.0 Contig18923_at Contig18923 - - 2e+0 At3g47130 F-box family protein-related S.X. H.G.
0.83 94.0 Contig18390_at Contig18390 - - 4e+0 At1g53110 - S.X. H.G.
0.80 92.5 Contig12988_at Contig12988 - - 5e-1 At5g55970 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.50 66.9 Contig17917_at Contig17917 - - 5e+0 At5g10140 FLC (FLOWERING LOCUS C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.5 99.8 GSM431568 pathogen isolates: Mock inoculated control - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
20.8 99.7 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
17.1 99.6 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
16.0 99.6 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
15.3 99.6 GSM431572 pathogen isolates: Polymyxa betae - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
15.1 99.5 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
14.4 99.5 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
12.1 99.3 GSM431571 pathogen isolates: Polymyxa betae - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
11.8 99.3 GSM431570 pathogen isolates: Mock inoculated control - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
10.2 99.1 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-2 38 Contig4953_at Contig4953 - - 1e-1 At5g50200 WR3 (WOUND-RESPONSIVE 3) C.G. S.X.
0.03 3e-1 36 Contig24315_at Contig24315 - - 1e+0 At2g17560 HMGB4 (HIGH MOBILITY GROUP B 4) C.G. S.X.
0.03 1e+0 34 HVSMEa0012N22r2_at HVSMEa0012N22r2 - - 4e+0 At4g26550 - C.G. S.X.
0.02 1e+0 34 Contig7492_s_at Contig7492 - - 4e-16 At3g14790 RHM3 (RHAMNOSE BIOSYNTHESIS 3) C.G. S.X.
0.01 1e+0 34 Contig7987_at Contig7987 - - 3e-15 At1g67280 lactoylglutathione lyase, putative / glyoxalase I, putative C.G. S.X.
0.01 1e+0 34 Contig7493_at Contig7493 - - 4e-30 At1g78570 RHM1 (RHAMNOSE BIOSYNTHESIS 1) C.G. S.X.
0.02 1e+0 34 Contig7492_at Contig7492 - - 4e-16 At3g14790 RHM3 (RHAMNOSE BIOSYNTHESIS 3) C.G. S.X.
0.02 4e+0 32 Contig10280_at Contig10280 - - 7e-22 At5g20510 AL5 (ALFIN-LIKE 5) C.G. S.X.
0.01 4e+0 32 Contig8571_at Contig8571 - - 1e-1 At1g28630 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 8e-3 42 Arabidopsis thaliana At4g39640 830118 GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast. - - - C.G. S.X.
0.02 3e+0 34 Glycine max PsAffx.psMA019xP21f_at PsAffx.psMA019xP21f - - 5e+0 At3g10195 - C.G. S.X.
0.40 1e-86 321 Oryza sativa Os04g0457500 AU075570 - Gamma-glutamyltranspeptidase family protein 7e+0 At4g12380 unknown protein C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.213755.1.S1_s_at pmrna26862 hypothetical protein - 1e+0 At5g27541 C.G. S.X.
0.68 0 1273 Triticum aestivum Ta.21001.1.S1_at CA607439 - - 1e+1 At3g56190 ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1621171_at CF568972 - - 2e-85 At5g14640 SK13 (SHAGGY-LIKE KINASE 13) C.G. S.X.
0.49 1e-89 329 Zea mays Zm.9423.1.A1_at BM268754 IDP2449 protein - 1e-1 At4g29210 GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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