Gene omics information

Query gene ID	Contig16468_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	98.7	Contig16468_at	Contig16468	-	-	8e-6	At2g42320	nucleolar protein gar2-related	S.X.	H.G.	Please select
0.21	22.6	EBro08_SQ010_A22_at	EBro08_SQ010_A22	-	-	1e+1	At5g39600	unknown protein	S.X.	H.G.	Please select
0.17	16.9	HVSMEb0002K02r2_s_at	HVSMEb0002K02r2	-	-	4e+0	At5g07500	PEI1	S.X.	H.G.	Please select
0.13	11.6	HT11A16u_x_at	HT11A16u	-	-	2e+0	At1g64080	unknown protein	S.X.	H.G.	Please select
0.11	9.4	Contig5287_at	Contig5287	-	-	3e-1	At5g41685	mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1)	S.X.	H.G.	Please select
0.09	7.4	HX12B17r_at	HX12B17r	-	-	1e+0	At2g34310	unknown protein	S.X.	H.G.	Please select
0.06	4.8	HT13I08r_at	HT13I08r	-	-	3e+0	At1g57790	F-box family protein	S.X.	H.G.	Please select
0.03	2.6	S0000800072B12F1_at	S0000800072B12F1	-	-	9e+0	At1g07476	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.8	99.8	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
22.8	99.8	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
11.0	99.2	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
11.0	99.2	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.1	98.7	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.1	98.7	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.3	98.5	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
6.7	98.3	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.7	98.3	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.6	98.2	GSM419980	Awn_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	6e-70	264	HVSMEb0011L02r2_x_at	HVSMEb0011L02r2	-	-	2e+0	At5g51810	GA20OX2 (GIBBERELLIN 20 OXIDASE 2)	C.G.	S.X.	Please select
0.26	6e-70	264	HVSMEb0011L02r2_s_at	HVSMEb0011L02r2	-	-	2e+0	At5g51810	GA20OX2 (GIBBERELLIN 20 OXIDASE 2)	C.G.	S.X.	Please select
0.27	4e-40	165	Contig19475_at	Contig19475	-	-	2e-9	At2g42320	nucleolar protein gar2-related	C.G.	S.X.	Please select
0.03	1e-2	40	Contig8327_at	Contig8327	-	-	6e+0	At5g08590	SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig18434_at	Contig18434	-	-	2e+0	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.02	9e-1	34	HVSMEn0016A01r2_at	HVSMEn0016A01r2	-	-	9e-1	At4g01460	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.03	9e-1	34	S0001100150F12F1_at	S0001100150F12F1	-	-	9e-1	At1g54960	ANP2	C.G.	S.X.	Please select
0.01	9e-1	34	Contig5096_at	Contig5096	-	-	2e-12	At4g16660	heat shock protein 70, putative / HSP70, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Contig6741_s_at	Contig6741	-	-	7e-2	At1g04770	male sterility MS5 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	8e-6	52	Arabidopsis thaliana	At2g42320	818833	nucleolar protein gar2-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	GmaAffx.49888.1.S1_at	BG352372	-	-	9e-1	At1g67480	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.23	1e-58	228	Oryza sativa	Os08g0505200	AK067190.1	-	Conserved hypothetical protein	4e-10	At2g42320	nucleolar protein gar2-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-1	38	Populus trichocarpa	Ptp.1391.1.S1_s_at	BU814293	hypothetical protein	-	1e-7	At3g57780	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	1e-81	303	Triticum aestivum	Ta.22166.1.A1_x_at	CA727726	-	-	3e-1	At1g09230	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	4e-2	38	Vitis vinifera	1615721_at	CA818745	-	-	4e+0	At3g23620	brix domain-containing protein	C.G.	S.X.	Please select
0.28	3e-34	145	Zea mays	Zm.2972.1.A1_at	BM073882	-	-	4e-3	At3g01810	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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