Gene omics information

Query gene ID	Contig16431_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.9	Contig16431_at	Contig16431	-	-	2e+0	At4g32590	ferredoxin-related	S.X.	H.G.	Please select
0.15	14.1	Contig8156_at	Contig8156	-	-	8e-1	At1g43860	transcription factor	S.X.	H.G.	Please select
0.15	14.1	Contig5710_at	Contig5710	-	-	6e-7	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	S.X.	H.G.	Please select
0.15	14.1	Contig11880_at	Contig11880	-	-	2e+0	At2g03110	RNA binding / nucleic acid binding	S.X.	H.G.	Please select
0.06	4.8	Contig9029_at	Contig9029	-	-	4e-8	At2g40890	CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)	S.X.	H.G.	Please select
0.05	4.1	Contig10265_at	Contig10265	-	-	2e-7	At5g24340	3'-5' exonuclease domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.5	99.4	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.0	99.2	GSM398275	Moroc9-75_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.6	99.0	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.5	98.8	GSM398274	Moroc9-75_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.3	98.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0	98.4	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.9	98.3	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.8	98.3	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5	98.2	GSM281748	Genotype: Morex - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
6.3	98.1	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-5	48	Contig1641_at	Contig1641	-	-	1e-5	At5g20340	BG5 (beta-1,3-glucanase 5)	C.G.	S.X.	Please select
0.02	4e-3	42	Contig10818_at	Contig10818	-	-	1e-2	At1g47970	unknown protein	C.G.	S.X.	Please select
0.02	6e-2	38	Contig2369_s_at	Contig2369	-	-	1e-16	At5g23900	60S ribosomal protein L13 (RPL13D)	C.G.	S.X.	Please select
0.04	6e-2	38	Contig9203_s_at	Contig9203	-	-	9e-1	At5g05230	ubiquitin-protein ligase	C.G.	S.X.	Please select
0.03	6e-2	38	HVSMEc0004G20r2_at	HVSMEc0004G20r2	-	-	1e+1	At5g28610	-	C.G.	S.X.	Please select
0.02	6e-2	38	Contig14302_at	Contig14302	-	-	5e+0	At5g39530	unknown protein	C.G.	S.X.	Please select
0.02	6e-2	38	Contig11487_at	Contig11487	-	-	2e+0	At5g24920	AtGDU5 (Arabidopsis thaliana GLUTAMINE DUMPER 5)	C.G.	S.X.	Please select
0.02	6e-2	38	Contig19599_at	Contig19599	-	-	6e-3	At2g39320	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.02	6e-2	38	Contig9202_at	Contig9202	-	-	2e-1	At4g00820	iqd17 (IQ-domain 17)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	34	Arabidopsis thaliana	At4g32590	829394	ferredoxin-related	F:electron carrier activity, iron-sulfur cluster binding;P:unknown;C:chloroplast;OBPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	5e-5	50	Glycine max	GmaAffx.11231.1.S1_at	CD417416	-	-	4e-12	At4g32590	ferredoxin-related	C.G.	S.X.	Please select
0.41	3e-90	333	Oryza sativa	Os05g0555300	AK062997.1	-	Ferredoxin domain containing protein	2e-12	At4g32590	ferredoxin-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	1e-2	42	Populus trichocarpa	Ptp.2366.1.S1_at	CK092128	-	-	2e-44	At4g32590	ferredoxin-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.68	0	831	Triticum aestivum	Ta.11368.1.S1_at	BQ169954	-	-	1e-1	At4g32590	ferredoxin-related	C.G.	S.X.	Please select
0.09	2e-4	46	Vitis vinifera	1616414_at	CD801378	hypothetical protein LOC100250753	-	1e-6	At4g32590	ferredoxin-related	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	Zm.1850.1.A1_at	CD484264	hypothetical protein LOC100273447	-	3e-8	At4g28730	glutaredoxin family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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