Gene omics information

Query gene ID	Contig16423_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig16423_at	Contig16423	-	-	2e+0	At3g02580	STE1 (STEROL 1)	S.X.	H.G.	Please select
0.91	98.1	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	S.X.	H.G.	Please select
0.83	94.0	Contig3334_at	Contig3334	-	-	2e-53	At3g53610	ATRAB8	S.X.	H.G.	Please select
0.83	94.0	Contig3335_at	Contig3335	-	-	3e-67	At5g59840	Ras-related GTP-binding family protein	S.X.	H.G.	Please select
0.83	94.0	Contig3337_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	S.X.	H.G.	Please select
0.44	58.9	Contig6860_at	Contig6860	-	-	8e-4	At5g66815	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.4	99.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.9	99.5	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.6	99.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.8	99.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.7	98.6	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.0	98.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	8e-1	34	Contig8475_at	Contig8475	-	-	3e+0	At3g15670	late embryogenesis abundant protein, putative / LEA protein, putative	C.G.	S.X.	Please select
0.02	8e-1	34	Contig16080_at	Contig16080	-	-	1e-4	At2g35960	NHL12	C.G.	S.X.	Please select
0.03	8e-1	34	HM13L06r_at	HM13L06r	-	-	7e-1	At5g63030	glutaredoxin, putative	C.G.	S.X.	Please select
0.03	8e-1	34	EBro02_SQ008_N01_s_at	EBro02_SQ008_N01	-	-	7e-20	At2g40205	60S ribosomal protein L41 (RPL41C)	C.G.	S.X.	Please select
0.01	8e-1	34	Contig6881_at	Contig6881	-	-	3e+0	At4g15150	glycine-rich protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig195_at	Contig195	-	-	2e-19	At2g40205	60S ribosomal protein L41 (RPL41C)	C.G.	S.X.	Please select
0.02	3e+0	32	HVSMEf0017F17r2_at	HVSMEf0017F17r2	-	-	3e+0	At4g36470	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig4745_at	Contig4745	-	-	2e+0	At5g37520	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig11579_at	Contig11579	-	-	7e-1	At2g16900	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At3g02580	820679	STE1 (STEROL 1)	Brassinosteroid biosynthetic enzyme, catalyzes delta7 sterol C-5 desaturation step. Mutant has dwarf phenotype.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	Gma.9476.1.S1_at	CA819542	-	-	2e-1	At4g36800	RCE1 (RUB1 CONJUGATING ENZYME 1)	C.G.	S.X.	Please select
0.12	7e-20	99	Oryza sativa	Os07g0191700	AK066389.1	-	Conserved hypothetical protein	3e-24	At1g07910	RNL (RNA LIGASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Populus trichocarpa	PtpAffx.37502.1.S1_at	CV258511	hypothetical protein	-	5e-12	At2g44110	MLO15 (MILDEW RESISTANCE LOCUS O 15)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	7e+0	32	Triticum aestivum	TaAffx.66685.1.S1_at	BG906728	-	-	3e+0	At5g61410	RPE	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1607318_a_at	CB981590	hypothetical protein LOC100264625	-	2e-1	At1g25520	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	ZmAffx.135.1.A1_at	AI667706	purine permease	-	3e+0	At2g43540	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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