Gene omics information

Query gene ID	Contig16350_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	98.7	Contig16350_at	Contig16350	-	-	9e-3	At3g57390	AGL18	S.X.	H.G.	Please select
0.57	74.9	Contig16351_at	Contig16351	-	-	5e-1	At4g13480	AtMYB79 (myb domain protein 79)	S.X.	H.G.	Please select
0.09	7.4	Contig8100_at	Contig8100	-	-	1e-24	At5g22000	RHF2A (RING-H2 GROUP F2A)	S.X.	H.G.	Please select
0.08	6.5	Contig2937_s_at	Contig2937	-	-	9e-27	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	S.X.	H.G.	Please select
0.08	6.5	Contig1730_s_at	Contig1730	-	-	4e-19	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.07	5.8	Contig5296_at	Contig5296	-	-	4e-25	At1g64550	ATGCN3	S.X.	H.G.	Please select
0.05	4.1	Contig15411_at	Contig15411	-	-	2e-4	At5g49890	CLC-C (CHLORIDE CHANNEL C)	S.X.	H.G.	Please select
0.03	2.6	Contig5115_at	Contig5115	-	-	3e-6	At2g32600	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.2	99.9	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
38.2	99.9	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
37.1	99.9	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
30.7	99.9	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
30.0	99.9	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
30.0	99.9	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
29.1	99.9	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
25.5	99.8	GSM419980	Awn_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
25.5	99.8	GSM440971	Control awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
12.6	99.4	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	1e-71	270	Contig12483_at	Contig12483	-	-	2e-3	At3g57390	AGL18	C.G.	S.X.	Please select
0.10	7e-42	171	Contig2198_at	Contig2198	-	-	3e-6	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.12	1e-40	167	Contig2200_s_at	Contig2200	-	-	2e-3	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.10	4e-37	155	Contig11029_at	Contig11029	-	-	2e-10	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select
0.10	2e-36	153	Contig7416_at	Contig7416	-	-	2e-4	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.09	4e-31	135	Contig3831_at	Contig3831	-	-	3e-15	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.10	2e-29	129	Contig10383_at	Contig10383	-	-	6e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.10	6e-27	121	Contig11229_at	Contig11229	-	-	2e-4	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.08	9e-23	107	Contig12031_at	Contig12031	-	-	6e-1	At2g22630	AGL17 (agamous-like 17)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	9e-3	42	Arabidopsis thaliana	At3g57390	824906	AGL18	encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-2	40	Glycine max	GmaAffx.70788.1.S1_at	AI959798	-	-	8e-35	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.47	2e-73	278	Oryza sativa	Os06g0162800	U78890.1	-	MADS box protein	6e-4	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e-3	44	Populus trichocarpa	PtpAffx.207908.1.S1_at	pmrna15697	hypothetical protein	-	9e-36	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	0	856	Triticum aestivum	Ta.3395.1.S1_at	CN009238	MADS-box transcription factor TaAGL8	-	5e-4	At3g57390	AGL18	C.G.	S.X.	Please select
0.11	7e-13	73	Vitis vinifera	1612606_at	AF373602.1	MADS-box protein 3	-	7e-31	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.46	7e-125	446	Zea mays	Zm.13248.1.A1_at	Y09301.1	-	-	2e-6	At3g57390	AGL18	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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