Gene omics information

Query gene ID	Contig16073_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.67	84.7	Contig25107_at	Contig25107	-	-	2e+0	At4g39235	unknown protein	S.X.	H.G.	Please select
0.59	75.8	HVSMEb0001F21r2_x_at	HVSMEb0001F21r2	-	-	4e+0	At5g48170	SLY2 (SLEEPY2)	S.X.	H.G.	Please select
0.55	72.0	Contig14012_at	Contig14012	-	-	7e-1	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	S.X.	H.G.	Please select
0.50	66.9	Contig22861_at	Contig22861	-	-	7e+0	At3g59880	unknown protein	S.X.	H.G.	Please select
0.48	63.2	HW08B21u_s_at	HW08B21u	-	-	1e+1	At5g23903	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig272_s_at	Contig272	-	-	5e-1	At3g45230	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.8	98.3	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.0	97.9	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.8	97.8	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.7	97.7	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.3	94.6	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM68906	27 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-4	46	Contig9954_at	Contig9954	-	-	8e-1	At1g18890	ATCDPK1 (CALCIUM-DEPENDENT PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.02	4e-3	42	Contig14123_at	Contig14123	-	-	2e-1	At1g01800	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.03	2e-2	40	Contig13672_at	Contig13672	-	-	3e+0	At3g14030	-	C.G.	S.X.	Please select
0.04	2e-2	40	HB20B10r_at	HB20B10r	-	-	8e+0	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	C.G.	S.X.	Please select
0.02	7e-2	38	Contig11754_at	Contig11754	-	-	6e-1	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	C.G.	S.X.	Please select
0.02	7e-2	38	Contig10170_at	Contig10170	-	-	3e+0	At3g29280	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	HS09F06u_at	HS09F06u	-	-	3e-4	At3g50330	HEC2 (HECATE 2)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig14925_at	Contig14925	-	-	1e-1	At1g27390	TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2)	C.G.	S.X.	Please select
0.03	3e-1	36	Contig7036_at	Contig7036	-	-	1e-1	At1g57565	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-2	40	Arabidopsis thaliana	At5g37200	833694	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, transferase activity, transferring glycosyl groups, transcription factor activity, zinc ion binding;P:unknown;C:unknown;PMOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	8e-4	46	Glycine max	PsAffx.CL2297Contig1_at	PsAffx.CL2297Contig1	-	-	9e-1	At1g06475	unknown protein	C.G.	S.X.	Please select
0.31	2e-42	174	Oryza sativa	OsAffx.25078.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	3e-9	63	Populus trichocarpa	PtpAffx.201207.1.S1_s_at	pmrna2390	hypothetical protein	-	1e-5	At4g33780	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	2e-16	87	Triticum aestivum	TaAffx.528.1.S1_at	BQ802169	-	-	2e+0	At3g56520	no apical meristem (NAM) family protein	C.G.	S.X.	Please select
0.02	4e-2	38	Vitis vinifera	1619494_at	CA810687	hypothetical protein LOC100258992	-	1e+0	At1g01380	ETC1 (ENHANCER OF TRY AND CPC 1)	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	Zm.11848.1.A1_at	CF631118	calmodulin	-	3e-1	At1g73630	calcium-binding protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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