CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig16054_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 66.9 Contig16054_at Contig16054 - - 4e-1 At1g06830 glutaredoxin family protein S.X. H.G.
0.67 84.7 Contig10540_at Contig10540 - - 7e-8 At3g57890 tubulin-specific chaperone C-related S.X. H.G.
0.57 74.9 Contig24303_at Contig24303 - - 3e-1 At3g09800 protein binding S.X. H.G.
0.55 72.0 Contig17823_at Contig17823 - - 2e+0 At5g52720 metal ion binding S.X. H.G.
0.50 66.9 Contig13652_at Contig13652 - - 8e-7 At1g32090 early-responsive to dehydration protein-related / ERD protein-related S.X. H.G.
0.44 58.9 Contig15831_at Contig15831 - - 1e+0 At3g15190 chloroplast 30S ribosomal protein S20, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.9 99.2 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
8.4 98.8 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.2 98.7 GSM282027 Malting_day1_Legacy_rep2 GSE11200 Expression data from malting barley seeds
7.9 98.7 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
7.5 98.6 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.4 98.5 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.3 98.5 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.2 98.5 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.5 98.2 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.3 98.1 GSM146374 Golden Promise shoot Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 34 Contig8242_at Contig8242 - - 1e+0 At5g11620 SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related C.G. S.X.
0.02 8e-1 34 Contig16703_at Contig16703 - - 4e-1 At1g04370 ATERF14 (Ethylene-responsive element binding factor 14) C.G. S.X.
0.01 3e+0 32 Contig14536_at Contig14536 - - 2e+0 At3g04500 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 3e+0 32 HVSMEn0008F09r2_at HVSMEn0008F09r2 - - 3e+0 At1g77885 unknown protein C.G. S.X.
0.02 3e+0 32 AF032682_at AF032682 - - 4e-1 At3g56590 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 3e+0 32 Contig18911_at Contig18911 - - 1e+0 At5g03030 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.01 3e+0 32 Contig17857_at Contig17857 - - 4e-5 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) C.G. S.X.
0.02 3e+0 32 Contig16551_at Contig16551 - - 3e-2 At3g58020 heat shock protein binding C.G. S.X.
0.01 3e+0 32 Contig15389_at Contig15389 - - 3e-6 At3g62720 XT1 (XYLOSYLTRANSFERASE 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Arabidopsis thaliana At1g06830 837195 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB - - - C.G. S.X.
0.03 2e+0 34 Glycine max Gma.14267.1.S1_at CA850808 - - 3e+1 At5g42785 unknown protein C.G. S.X.
0.20 9e-44 178 Oryza sativa Os02g0611400 AK101310.1 - Protein prenyltransferase domain containingprotein 3e-1 At3g44950 glycine-rich protein C.G. S.X.
0.06 2e+0 34 Populus trichocarpa PtpAffx.154332.1.S1_at AJ779710 - - 2e+0 Atmg01300 - C.G. S.X.
0.57 0 791 Triticum aestivum Ta.3526.1.S1_at BJ318709 - - 9e-1 At5g42325 transcription elongation factor-related C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1618564_at CD004713 - - 1e+0 At3g25011 unknown protein C.G. S.X.
0.20 3e-40 165 Zea mays Zm.13143.1.A1_at AY105306.1 hypothetical protein LOC100191497 - 6e-1 At3g24100 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage