Gene omics information

Query gene ID	Contig16046_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig16046_at	Contig16046	-	-	1e+0	At5g10860	CBS domain-containing protein	S.X.	H.G.	Please select
0.57	74.9	Contig12571_at	Contig12571	-	-	3e+0	At5g37520	unknown protein	S.X.	H.G.	Please select
0.47	62.2	Contig8129_at	Contig8129	-	-	5e-1	At1g23145	RALFL2 (RALF-LIKE 2)	S.X.	H.G.	Please select
0.35	45.1	Contig18916_at	Contig18916	-	-	9e-1	At5g09995	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig7870_at	Contig7870	-	-	9e-6	At4g39170	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	S.X.	H.G.	Please select
0.33	42.6	Contig5709_at	Contig5709	-	-	3e-56	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	S.X.	H.G.	Please select
0.15	14.1	Contig7966_at	Contig7966	-	-	4e+0	At2g42830	SHP2 (SHATTERPROOF 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.9	99.8	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
21.7	99.8	GSM373004	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
20.3	99.7	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
18.4	99.7	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
18.0	99.7	GSM373006	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.0	99.4	GSM373002	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.9	99.4	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.3	99.4	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.7	99.3	GSM373005	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.4	99.3	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	8e-148	521	HV_CEa0009C05r2_s_at	HV_CEa0009C05r2	-	-	9e+0	At5g50175	unknown protein	C.G.	S.X.	Please select
0.02	9e-3	40	Contig5551_at	Contig5551	-	-	1e-17	At2g32260	cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative	C.G.	S.X.	Please select
0.03	3e-2	38	Contig26360_at	Contig26360	-	-	1e+0	At2g39040	peroxidase, putative	C.G.	S.X.	Please select
0.02	3e-2	38	Contig14575_at	Contig14575	-	-	7e-26	At4g38040	exostosin family protein	C.G.	S.X.	Please select
0.03	3e-2	38	Contig11939_at	Contig11939	-	-	5e-3	At5g58110	ATPase activator/ chaperone binding	C.G.	S.X.	Please select
0.03	1e-1	36	Contig5761_s_at	Contig5761	-	-	2e+0	At5g20650	COPT5	C.G.	S.X.	Please select
0.04	1e-1	36	Contig11594_at	Contig11594	-	-	4e+0	At1g62690	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Contig11593_x_at	Contig11593	-	-	1e+1	Atcg00800	-	C.G.	S.X.	Please select
0.02	1e-1	36	Contig7624_s_at	Contig7624	-	-	9e-16	At2g27680	aldo/keto reductase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g10860	830953	CBS domain-containing protein	F:unknown;P:response to salt stress;C:mitochondrion;BOAPFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-1	36	Glycine max	GmaAffx.80209.1.S1_at	BE804212	-	-	2e-17	At5g01500	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.22	7e-19	95	Oryza sativa	OsAffx.21509.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.46359.1.S1_at	AJ774114	hypothetical protein	-	1e-6	At3g44620	protein tyrosine phosphatase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.86536.1.S1_at	CA606170	-	-	9e+0	At2g21290	unknown protein	C.G.	S.X.	Please select
0.04	8e-2	36	Vitis vinifera	1609442_at	CF373210	hypothetical protein LOC100243127	-	3e-4	At3g05800	transcription factor	C.G.	S.X.	Please select
0.19	2e-31	135	Zea mays	Zm.3566.1.A1_at	BG873859	-	-	1e+0	At3g23140	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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