Gene omics information

Query gene ID	Contig159_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	62.2	Contig159_at	Contig159	-	-	8e-17	At5g59690	histone H4	S.X.	H.G.	Please select
0.67	84.7	Contig2804_x_at	Contig2804	-	-	3e-1	At1g21550	calcium-binding protein, putative	S.X.	H.G.	Please select
0.44	58.9	Contig6204_at	Contig6204	-	-	4e-2	At3g59845	NADP-dependent oxidoreductase, putative	S.X.	H.G.	Please select
0.21	22.6	Contig6770_at	Contig6770	-	-	4e+0	At5g08055	-	S.X.	H.G.	Please select
0.17	16.9	Contig2789_at	Contig2789	-	-	5e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	S.X.	H.G.	Please select
0.02	1.8	Contig10869_s_at	Contig10869	-	-	6e+0	At5g62300	40S ribosomal protein S20 (RPS20C)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.5	99.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
27.3	99.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
24.2	99.8	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
23.8	99.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
23.0	99.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
22.9	99.8	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
22.4	99.8	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
22.0	99.8	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
15.8	99.6	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.7	99.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.87	0	801	Contig500_at	Contig500	-	-	4e-19	At5g59690	histone H4	C.G.	S.X.	Please select
0.49	2e-142	504	EBro03_SQ005_P18_x_at	EBro03_SQ005_P18	-	-	2e-21	At5g59690	histone H4	C.G.	S.X.	Please select
0.49	2e-142	504	EBro03_SQ005_P18_at	EBro03_SQ005_P18	-	-	2e-21	At5g59690	histone H4	C.G.	S.X.	Please select
0.44	2e-142	504	Contig576_x_at	Contig576	-	-	2e-21	At5g59690	histone H4	C.G.	S.X.	Please select
0.44	2e-142	504	Contig576_s_at	Contig576	-	-	2e-21	At5g59690	histone H4	C.G.	S.X.	Please select
0.55	3e-141	500	Contig197_at	Contig197	-	-	1e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.55	3e-141	500	Contig197_s_at	Contig197	-	-	1e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.52	4e-140	496	Contig659_at	Contig659	-	-	2e-26	At5g59690	histone H4	C.G.	S.X.	Please select
0.52	7e-139	492	Contig131_at	Contig131	-	-	1e-21	At5g59690	histone H4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	8e-17	87	Arabidopsis thaliana	At5g59690	836090	histone H4	F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.58	5e-93	341	Glycine max	PsAffx.C1000260_s_at	PsAffx.C1000260	-	-	9e-10	At5g59690	histone H4	C.G.	S.X.	Please select
0.59	7e-136	484	Oryza sativa	Os09g0433600	AK058686.1	-	Histone H4	2e-20	At1g07660	histone H4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.45	2e-6	54	Populus trichocarpa	PtpAffx.4633.2.S1_at	CA823688	-	-	9e-47	At1g07820	histone H4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.75	5e-166	583	Triticum aestivum	TaAffx.132315.2.S1_x_at	BE493709	-	-	3e-22	At5g59690	histone H4	C.G.	S.X.	Please select
0.46	3e-23	107	Vitis vinifera	1613076_at	CB970842	-	-	2e-42	At5g59690	histone H4	C.G.	S.X.	Please select
0.51	2e-132	470	Zea mays	Zm.6721.9.A1_a_at	BM380489	Histone H4	-	6e-18	At5g59970	histone H4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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