Gene omics information

Query gene ID	Contig15990_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig15990_at	Contig15990	-	-	7e+0	At2g14910	unknown protein	S.X.	H.G.	Please select
0.71	87.1	Contig15087_at	Contig15087	-	-	8e-3	At5g14390	-	S.X.	H.G.	Please select
0.55	72.0	Contig2704_s_at	Contig2704	-	-	9e-1	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	S.X.	H.G.	Please select
0.53	69.7	Contig17040_at	Contig17040	-	-	2e-2	At3g60490	AP2 domain-containing transcription factor TINY, putative	S.X.	H.G.	Please select
0.50	66.9	EBed02_SQ002_A05_at	EBed02_SQ002_A05	-	-	1e+1	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	S.X.	H.G.	Please select
0.46	61.0	EBpi07_SQ002_E06_at	EBpi07_SQ002_E06	-	-	2e+0	At1g44835	YbaK/prolyl-tRNA synthetase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.4	99.5	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.2	99.4	GSM373008	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.2	99.4	GSM373005	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.2	99.2	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.0	99.2	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.5	99.2	GSM372978	genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.7	99.0	GSM373004	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.7	99.0	GSM373001	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.5	99.0	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.2	99.0	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	34	Contig14949_at	Contig14949	-	-	3e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	C.G.	S.X.	Please select
0.02	8e-1	34	Contig2501_at	Contig2501	-	-	4e-14	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	C.G.	S.X.	Please select
0.02	8e-1	34	Contig24971_at	Contig24971	-	-	7e-3	At3g01513	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig13621_s_at	Contig13621	-	-	2e-4	At1g12070	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig7649_at	Contig7649	-	-	2e+0	At1g52342	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	Contig2185_at	Contig2185	-	-	4e-99	At1g06430	FTSH8	C.G.	S.X.	Please select
0.01	3e+0	32	Contig6734_at	Contig6734	-	-	4e+0	At3g20230	50S ribosomal protein L18 family	C.G.	S.X.	Please select
0.02	3e+0	32	Contig16305_at	Contig16305	-	-	4e-7	At3g13040	myb family transcription factor	C.G.	S.X.	Please select
0.02	3e+0	32	Contig9585_at	Contig9585	-	-	5e-4	At4g26080	ABI1 (ABA INSENSITIVE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e+0	32	Arabidopsis thaliana	At2g14910	815980	unknown protein	F:unknown;P:unknown;C:chloroplast;BOPM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	34	Glycine max	GmaAffx.60479.4.S1_at	BG507369	-	-	8e-11	At2g16400	BLH7 (bell1-like homeodomain 7)	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	OsAffx.8513.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	9e+0	32	Populus trichocarpa	PtpAffx.35798.1.A1_at	BP930286	hypothetical protein	-	9e-10	At5g01920	STN8	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	Ta.4046.1.S1_a_at	BJ257633	-	-	5e+0	At2g28790	osmotin-like protein, putative	C.G.	S.X.	Please select
0.02	5e-1	34	Vitis vinifera	1611210_at	CD009361	-	-	3e-1	At5g09250	KIWI	C.G.	S.X.	Please select
0.02	7e-1	34	Zea mays	Zm.10110.1.A1_at	BM380771	-	-	2e+0	At5g58470	TAF15b (TBP-ASSOCIATED FACTOR 15b)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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