CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig15956_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 90.8 Contig15956_at Contig15956 - - 7e-1 At4g00130 - S.X. H.G.
0.58 74.9 Contig13261_at Contig13261 - - 4e-5 At4g13730 RabGAP/TBC domain-containing protein S.X. H.G.
0.53 69.7 Contig1139_s_at Contig1139 - - 1e-19 At3g07110 60S ribosomal protein L13A (RPL13aA) S.X. H.G.
0.51 67.5 HT05P07u_s_at HT05P07u - - 3e+0 At1g32585 VQ motif-containing protein-related S.X. H.G.
0.44 58.9 Contig10962_at Contig10962 - - 1e+0 At4g27657 unknown protein S.X. H.G.
0.44 58.9 Contig14264_at Contig14264 - - 2e+0 At1g48780 unknown protein S.X. H.G.
0.44 58.9 Contig7911_at Contig7911 - - 2e-4 At4g28400 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.42 55.2 Contig16251_at Contig16251 - - 2e-2 At1g74140 - S.X. H.G.
0.41 53.9 Contig18744_at Contig18744 - - 2e+0 At5g41630 F-box family protein S.X. H.G.
0.41 53.9 rbags21n02_at rbags21n02 - - 3e-1 At2g46680 ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.3 99.4 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
9.6 99.0 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
8.5 98.8 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
7.2 98.5 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
6.9 98.3 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.3 98.1 GSM372967 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.3 98.1 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.2 98.0 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
5.7 97.7 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
5.3 97.4 GSM372968 genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 34 Contig5079_at Contig5079 - - 3e-38 At4g36690 ATU2AF65A C.G. S.X.
0.03 1e+0 32 Contig16623_at Contig16623 - - 6e-21 At1g16740 ribosomal protein L20 family protein C.G. S.X.
0.04 1e+0 32 HU09K16u_at HU09K16u - - 3e-1 At5g40500 unknown protein C.G. S.X.
0.02 1e+0 32 Contig25079_at Contig25079 - - 1e-1 At4g14870 P-P-bond-hydrolysis-driven protein transmembrane transporter C.G. S.X.
0.02 5e+0 30 Contig10249_at Contig10249 - - 1e-4 At1g48480 RKL1 C.G. S.X.
0.01 5e+0 30 Contig8851_at Contig8851 - - 3e+0 At3g02720 DJ-1 family protein / protease-related C.G. S.X.
0.01 5e+0 30 Contig10526_at Contig10526 - - 6e-8 At3g15380 choline transporter-related C.G. S.X.
0.03 5e+0 30 Contig9844_at Contig9844 - - 3e-1 At5g24860 FPF1 (FLOWERING PROMOTING FACTOR 1) C.G. S.X.
0.03 5e+0 30 Contig9396_at Contig9396 - - 6e+0 At3g49030 F-box family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-1 34 Arabidopsis thaliana At4g00130 825649 - F:unknown;P:biological_process unknown;C:mitochondrion;PO - - - C.G. S.X.
0.04 4e+0 32 Glycine max Gma.16998.1.A1_at BE820507 - - 1e+1 At5g42760 - C.G. S.X.
0.04 6e-12 71 Oryza sativa Os06g0283300 9634.m01742 - Serine/threonine protein kinase family protein 1e-4 At5g15730 serine/threonine protein kinase, putative C.G. S.X.
0.04 4e+0 32 Populus trichocarpa PtpAffx.207462.1.S1_at pmrna14810 hypothetical protein - 2e-5 At5g12970 C2 domain-containing protein C.G. S.X.
0.51 1e-97 355 Triticum aestivum TaAffx.20965.1.S1_at CA691107 - - 2e-3 At5g15730 serine/threonine protein kinase, putative C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1619918_at CF372968 hypothetical protein LOC100242904 - 3e+0 At5g64816 unknown protein C.G. S.X.
0.03 5e+0 30 Zea mays Zm.3682.1.A1_at BG874096 - - 1e+0 At3g06590 transcription factor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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