Gene omics information

Query gene ID	Contig15918_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	74.9	Contig15918_at	Contig15918	-	-	2e+0	At5g43285	-	S.X.	H.G.	Please select
0.50	66.9	Contig12759_at	Contig12759	-	-	7e-19	At4g33030	SQD1	S.X.	H.G.	Please select
0.40	53.1	HVSMEm0008L21r2_at	HVSMEm0008L21r2	-	-	5e+0	At3g05020	ACP1 (acyl carrier protein 1)	S.X.	H.G.	Please select
0.38	49.5	Contig6933_s_at	Contig6933	-	-	3e-1	At3g56340	40S ribosomal protein S26 (RPS26C)	S.X.	H.G.	Please select
0.36	47.1	Contig5766_at	Contig5766	-	-	7e-7	At2g24060	translation initiation factor 3 (IF-3) family protein	S.X.	H.G.	Please select
0.31	38.6	HVSMEl0002K19r2_at	HVSMEl0002K19r2	-	-	7e+0	At4g31790	diphthine synthase, putative (DPH5)	S.X.	H.G.	Please select
0.22	24.2	Contig13103_at	Contig13103	-	-	2e+0	At5g10570	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.6	99.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.6	99.5	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.4	99.5	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.2	99.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.4	99.2	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
5.0	97.2	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-4	44	Contig8555_at	Contig8555	-	-	2e+0	At4g08670	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	8e-1	34	Contig6034_at	Contig6034	-	-	1e-3	At5g05140	transcription elongation factor-related	C.G.	S.X.	Please select
0.02	8e-1	34	Contig16102_at	Contig16102	-	-	2e-13	At4g19540	INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE)	C.G.	S.X.	Please select
0.03	3e+0	32	HB24G14r_at	HB24G14r	-	-	1e-2	At5g33210	SRS8 (SHI-RELATED SEQUENCE 8)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig7845_at	Contig7845	-	-	6e-1	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig16649_at	Contig16649	-	-	6e-1	At4g12540	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig3723_at	Contig3723	-	-	6e-88	At1g16300	GAPCP-2	C.G.	S.X.	Please select
0.02	3e+0	32	rbags10p20_at	rbags10p20	-	-	5e-2	At3g62830	AUD1	C.G.	S.X.	Please select
0.02	3e+0	32	Contig11557_at	Contig11557	-	-	2e+0	At5g27860	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g43285	3771413	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	PsAffx.C132000023_at	PsAffx.C132000023	-	-	4e+0	At3g47640	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.13	3e-28	127	Oryza sativa	Os03g0798200	AK071454.1	-	Zn-finger, RING domain containing protein	4e-9	At1g06770	DRIP1 (DREB2A-INTERACTING PROTEIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-2	40	Populus trichocarpa	PtpAffx.217527.1.S1_at	pmrna32822	hypothetical protein	-	3e+0	At2g27580	zinc finger (AN1-like) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	Ta.12014.1.A1_at	BJ250107	-	-	3e-1	At4g33680	AGD2 (ABERRANT GROWTH AND DEATH 2)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1618438_at	CF204732.1	-	-	2e+0	At1g29060	-	C.G.	S.X.	Please select
0.16	6e-23	107	Zea mays	Zm.17615.1.A1_at	CK347383	protein binding protein	-	2e+0	At2g20620	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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