CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig15917_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 92.5 Contig15917_at Contig15917 - - 3e-1 At3g58070 GIS (GLABROUS INFLORESCENCE STEMS) S.X. H.G.
0.67 84.7 Contig14156_at Contig14156 - - 3e+0 At1g74960 FAB1 (FATTY ACID BIOSYNTHESIS 1) S.X. H.G.
0.55 72.0 Contig12216_at Contig12216 - - 6e+0 At4g39130 dehydrin family protein S.X. H.G.
0.32 40.3 Contig5284_at Contig5284 - - 2e-82 At5g22780 adaptin family protein S.X. H.G.
0.15 14.1 Contig20133_at Contig20133 - - 1e-7 At2g36250 FTSZ2-1 S.X. H.G.
0.11 9.4 Contig10917_at Contig10917 - - 5e-2 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.5 99.2 GSM261024 ABA-Early-rep1 GSE10328 ABA experiment
9.0 98.9 GSM261042 before 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.2 98.7 GSM261040 Dicktoo-deacclimation-rep2 GSE10329 Low temperature stress in cv. Dicktoo
6.8 98.3 GSM261034 Dicktoo-chilling-rep2 GSE10329 Low temperature stress in cv. Dicktoo
6.6 98.2 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
6.6 98.2 GSM261038 Dicktoo-subzero-rep3 GSE10329 Low temperature stress in cv. Dicktoo
6.5 98.2 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
6.2 98.0 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
6.2 98.0 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
5.3 97.4 GSM261028 ABA-Late-rep2 GSE10328 ABA experiment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-8 57 Contig18098_at Contig18098 - - 5e+0 At5g26890 unknown protein C.G. S.X.
0.04 1e-1 36 HW03K13u_at HW03K13u - - 4e+0 At3g06060 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.02 1e-1 36 Contig9888_at Contig9888 - - 7e-1 At3g47140 F-box family protein-related C.G. S.X.
0.02 1e-1 36 Contig7382_s_at Contig7382 - - 2e-13 At1g43670 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative C.G. S.X.
0.02 1e-1 36 Contig7382_at Contig7382 - - 2e-13 At1g43670 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative C.G. S.X.
0.02 5e-1 34 Contig15629_at Contig15629 - - 8e-1 At1g75550 glycine-rich protein C.G. S.X.
0.04 5e-1 34 Contig22113_at Contig22113 - - 5e+0 At3g04430 anac049 (Arabidopsis NAC domain containing protein 49) C.G. S.X.
0.03 5e-1 34 Contig19293_at Contig19293 - - 5e-1 At1g19960 - C.G. S.X.
0.01 5e-1 34 Contig11240_at Contig11240 - - 2e-8 At2g01170 BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At3g58070 824976 GIS (GLABROUS INFLORESCENCE STEMS) Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile–adult leaf transition and inducing the formation of rosette leaves on inflorescence stems. - - - C.G. S.X.
0.03 2e+0 34 Glycine max PsAffx.C45000014_at PsAffx.C45000014 - - 5e-1 At1g04480 60S ribosomal protein L23 (RPL23A) C.G. S.X.
0.28 1e-41 171 Oryza sativa OsAffx.29643.1.S1_at - - - 0 C.G. S.X.
0.03 6e+0 32 Populus trichocarpa PtpAffx.223469.1.S1_at pmrna41495 hypothetical protein - 5e+0 At2g01340 unknown protein C.G. S.X.
0.74 6e-138 490 Triticum aestivum Ta.20672.1.S1_at CA592965 - - 4e+0 At3g21352 unknown protein C.G. S.X.
0.04 5e+0 30 Vitis vinifera 1617478_at BQ792138 - - 3e+0 At4g09467 - C.G. S.X.
0.19 3e-36 151 Zea mays Zm.258.1.S1_at X67323.1 - - 2e-3 At3g09032 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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