Gene omics information

Query gene ID	Contig15915_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig15915_at	Contig15915	-	-	2e-3	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	S.X.	H.G.	Please select
0.50	66.9	Contig3380_s_at	Contig3380	-	-	4e+0	At3g59960	ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4)	S.X.	H.G.	Please select
0.50	66.9	Contig3131_at	Contig3131	-	-	6e-6	At4g00860	ATOZI1	S.X.	H.G.	Please select
0.44	58.9	HVSMEf0019K16r2_at	HVSMEf0019K16r2	-	-	4e+0	At5g09270	unknown protein	S.X.	H.G.	Please select
0.06	4.8	Contig17679_at	Contig17679	-	-	4e-1	At3g14200	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.04	3.4	Contig20237_at	Contig20237	-	-	1e+0	At1g61810	BGLU45 (BETA-GLUCOSIDASE 45)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
46.9	99.9	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
27.4	99.8	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
17.9	99.7	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
17.8	99.7	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.6	99.5	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.1	99.2	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.0	99.2	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.0	99.2	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.8	99.2	GSM146363	Maythorpe Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.8	99.2	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	40	HVSMEf0012H17r2_at	HVSMEf0012H17r2	-	-	8e-2	At4g32100	galactosyltransferase	C.G.	S.X.	Please select
0.03	2e-1	36	HX10O03r_at	HX10O03r	-	-	3e+0	At5g55680	glycine-rich protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig5113_at	Contig5113	-	-	5e-8	At4g21790	TOM1 (TOBAMOVIRUS MULTIPLICATION 1)	C.G.	S.X.	Please select
0.06	2e-1	36	HM10P19r_at	HM10P19r	-	-	1e+0	At4g03298	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig2915_at	Contig2915	UDP-D-glucuronate decarboxylase	-	3e-19	At2g47650	UXS4 (UDP-XYLOSE SYNTHASE 4)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig23870_s_at	Contig23870	-	-	2e-1	At1g56430	NAS4 (NICOTIANAMINE SYNTHASE 4)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig3146_at	Contig3146	-	-	2e-5	At1g58290	HEMA1	C.G.	S.X.	Please select
0.02	1e+0	34	AF026538_at	AF026538	ABA-responsive protein	-	7e-1	At2g37580	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig17547_at	Contig17547	-	-	7e-7	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-3	44	Arabidopsis thaliana	At1g24400	839057	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	High-affinity transporter for neutral and acidic amino acids, expressed in tapetum tissue of anthers	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	7e-4	46	Glycine max	GmaAffx.48461.1.S1_at	AW396191	-	-	4e-15	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.50	1e-175	617	Oryza sativa	Os04g0462400	9632.m03670	-	Lysine and histidine specific transporter	1e-5	At1g25530	lysine and histidine specific transporter, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e+0	34	Populus trichocarpa	PtpAffx.212850.1.S1_at	pmrna25146	lysine/histidine transporter	-	9e-28	At5g40780	LHT1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	6e-47	188	Triticum aestivum	TaAffx.24751.1.S1_at	CA713136	-	-	2e-1	At1g25530	lysine and histidine specific transporter, putative	C.G.	S.X.	Please select
0.05	2e-4	46	Vitis vinifera	1617470_s_at	BQ797931	similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1); amino acid transmembrane transporter	-	6e-11	At1g48640	lysine and histidine specific transporter, putative	C.G.	S.X.	Please select
0.13	4e-6	52	Zea mays	Zm.13403.1.S1_at	AF457949.1	-	-	2e-2	At1g67640	lysine and histidine specific transporter, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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