Gene omics information

Query gene ID	Contig15872_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig15872_at	Contig15872	-	-	1e+0	At4g24410	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig9319_at	Contig9319	-	-	3e-3	At3g66654	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	S.X.	H.G.	Please select
0.61	78.7	Contig11880_at	Contig11880	-	-	2e+0	At2g03110	RNA binding / nucleic acid binding	S.X.	H.G.	Please select
0.60	77.3	Contig8797_at	Contig8797	-	-	1e-2	At4g09080	TOC75-IV	S.X.	H.G.	Please select
0.50	66.9	Contig15782_at	Contig15782	-	-	1e+0	At2g42760	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig4784_at	Contig4784	-	-	8e-3	At1g67600	-	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.4	98.5	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.8	98.3	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.5	98.2	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.1	98.0	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.8	97.8	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.7	97.7	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.5	97.6	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.2	97.4	GSM398279	Moroc9-75_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9	97.1	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
4.9	97.1	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	36	HVSMEl0011A04f_at	HVSMEl0011A04f	-	-	3e-22	Atcg00180	-	C.G.	S.X.	Please select
0.01	6e-1	34	Contig12107_at	Contig12107	-	-	2e-10	At5g22000	RHF2A (RING-H2 GROUP F2A)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig7727_at	Contig7727	-	-	2e-3	At5g15120	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig13403_at	Contig13403	-	-	9e-31	At5g36950	DegP10 (DegP protease 10)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig3530_at	Contig3530	-	-	4e-37	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	C.G.	S.X.	Please select
0.03	3e+0	32	Contig14276_s_at	Contig14276	-	-	2e-2	At4g21720	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig14275_at	Contig14275	-	-	4e-2	At4g21720	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig2346_at	Contig2346	-	-	2e-2	At5g36890	BGLU42 (BETA GLUCOSIDASE 42)	C.G.	S.X.	Please select
0.02	1e+1	30	Contig14512_at	Contig14512	-	-	2e-3	At5g28630	glycine-rich protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At4g24410	828543	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	32	Glycine max	HgAffx.6534.1.S1_at	CB825677	-	-	5e+0	At3g59430	unknown protein	C.G.	S.X.	Please select
0.04	3e-21	103	Oryza sativa	Os03g0218300	9631.m01109	-	Arabidopsis thaliana 130.7kDa hypothetical proteinfamily protein	3e-15	At3g63500	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.26605.1.A1_at	CK090626	hypothetical protein	-	2e-1	At2g04650	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	9e-76	284	Triticum aestivum	Ta.12439.1.A1_at	BQ172338	-	-	2e+0	At1g05540	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1617599_at	CF373544	hypothetical protein LOC100265390	-	2e-42	At4g23400	PIP1	C.G.	S.X.	Please select
0.11	7e-13	73	Zea mays	Zm.12837.1.A1_at	AY106006.1	-	-	2e+0	At1g72170	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage