Gene omics information

Query gene ID	Contig15846_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig15846_at	Contig15846	-	-	3e+0	At5g27910	NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8)	S.X.	H.G.	Please select
0.80	92.5	Contig17954_at	Contig17954	-	-	2e+0	At3g63050	unknown protein	S.X.	H.G.	Please select
0.80	92.5	Contig25390_at	Contig25390	-	-	6e+0	At1g06330	copper-binding family protein	S.X.	H.G.	Please select
0.60	77.3	Contig16899_at	Contig16899	-	-	6e+0	At3g46666	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig18560_at	Contig18560	-	-	2e-9	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	S.X.	H.G.	Please select
0.33	42.6	EBro04_SQ003_G13_at	EBro04_SQ003_G13	-	-	2e+0	At5g44450	methyltransferase	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	98.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.9	97.1	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.8	97.0	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.6	96.8	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3	96.4	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	EBro08_SQ003_O09_at	EBro08_SQ003_O09	-	-	2e-1	At5g25490	zinc finger (Ran-binding) family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig9471_at	Contig9471	-	-	6e-3	At1g09645	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig10798_at	Contig10798	-	-	4e-2	At1g04230	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	HU09P03u_at	HU09P03u	-	-	6e-30	At2g44120	60S ribosomal protein L7 (RPL7C)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig13690_at	Contig13690	-	-	3e-2	At5g28610	-	C.G.	S.X.	Please select
0.01	1e+0	34	Contig12078_at	Contig12078	-	-	4e-6	At3g50380	-	C.G.	S.X.	Please select
0.01	1e+0	34	Contig3992_at	Contig3992	-	-	1e-40	At1g14670	endomembrane protein 70, putative	C.G.	S.X.	Please select
0.01	5e+0	32	Contig6275_at	Contig6275	-	-	4e-10	At1g14650	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein	C.G.	S.X.	Please select
0.02	5e+0	32	EBpi01_SQ002_A19_at	EBpi01_SQ002_A19	-	-	2e-1	At3g04945	LCR18 (Low-molecular-weight cysteine-rich 18)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At5g27910	832857	NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	GmaAffx.7933.1.S1_at	AI855691	-	-	9e-1	At3g57090	BIGYIN	C.G.	S.X.	Please select
0.10	3e-10	67	Oryza sativa	Os09g0566100	AK065725.1	-	Protein of unknown function DUF618 domaincontaining protein	1e-1	At2g36480	zinc finger (C2H2-type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	9e-1	36	Populus trichocarpa	PtpAffx.125350.1.S1_at	DN501683	-	-	1e+0	At5g22000	RHF2A (RING-H2 GROUP F2A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	2e-81	303	Triticum aestivum	Ta.14647.1.A1_at	CK169127	-	-	3e-1	At5g49015	Expressed protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1607171_at	CB970841	-	-	4e+0	At5g46850	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zea mays	Zm.6439.1.A1_at	AF076955.1	eucaryotic initiation factor7	-	3e-12	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage