Gene omics information

Query gene ID	Contig15844_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig15844_at	Contig15844	-	-	2e-10	At3g21240	4CL2 (4-COUMARATE:COA LIGASE 2)	S.X.	H.G.	Please select
0.67	84.7	HZ49N13r_at	HZ49N13r	-	-	3e+0	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	S.X.	H.G.	Please select
0.63	80.3	Contig8003_at	Contig8003	-	-	2e+0	At5g22100	RNA cyclase family protein	S.X.	H.G.	Please select
0.56	74.3	Contig8647_s_at	Contig8647	-	-	4e-19	At5g43930	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.53	69.7	Contig1339_at	Contig1339	-	-	4e-66	At3g56800	CAM3 (CALMODULIN 3)	S.X.	H.G.	Please select
0.50	66.9	Contig17811_at	Contig17811	-	-	4e+0	At2g05590	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
80.9	100.0	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
53.7	100.0	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
45.6	99.9	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
21.7	99.8	GSM373003	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
18.3	99.7	GSM373002	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
17.4	99.6	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.0	99.2	GSM372949	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.4	98.8	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.0	98.7	GSM373009	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.8	98.6	GSM372944	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	2e-79	295	Contig4676_at	Contig4676	-	-	6e-2	At1g51680	4CL1 (4-COUMARATE:COA LIGASE 1)	C.G.	S.X.	Please select
0.37	3e-72	272	Contig4674_at	Contig4674	-	-	5e-2	At1g51680	4CL1 (4-COUMARATE:COA LIGASE 1)	C.G.	S.X.	Please select
0.40	1e-71	270	Contig4677_at	Contig4677	-	-	8e-3	At1g65060	4CL3	C.G.	S.X.	Please select
0.07	8e-11	67	HVSMEg0010P03r2_at	HVSMEg0010P03r2	-	-	2e-5	At1g20510	OPCL1 (OPC-8:0 COA LIGASE1)	C.G.	S.X.	Please select
0.04	1e-3	44	Contig10937_at	Contig10937	-	-	3e-10	At1g20490	AMP-dependent synthetase and ligase family protein	C.G.	S.X.	Please select
0.02	4e-3	42	Contig7666_s_at	Contig7666	-	-	3e-3	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	C.G.	S.X.	Please select
0.02	4e-3	42	Contig7666_at	Contig7666	-	-	3e-3	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	C.G.	S.X.	Please select
0.02	2e-2	40	Contig14708_at	Contig14708	-	-	6e-4	At2g21960	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	Contig15167_at	Contig15167	-	-	5e+0	At2g26975	copper transporter, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-10	67	Arabidopsis thaliana	At3g21240	821678	4CL2 (4-COUMARATE:COA LIGASE 2)	encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-5	50	Glycine max	PsAffx.C5000077_s_at	PsAffx.C5000077	-	-	1e+1	At5g45875	SCRL27 (SCR-Like 27)	C.G.	S.X.	Please select
0.54	0	837	Oryza sativa	Os08g0448000	AK120964.1	-	4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment)	1e-6	At3g21240	4CL2 (4-COUMARATE:COA LIGASE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	8e-7	56	Populus trichocarpa	PtpAffx.12056.3.S1_a_at	CV259494	4-Coumarate:CoA ligase	-	5e-22	At1g65060	4CL3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.71	0	1293	Triticum aestivum	TaAffx.128713.1.S1_at	CK215460	-	-	1e-8	At3g21240	4CL2 (4-COUMARATE:COA LIGASE 2)	C.G.	S.X.	Please select
0.13	4e-5	48	Vitis vinifera	1619320_at	CB974305	-	-	7e-13	At1g65060	4CL3	C.G.	S.X.	Please select
0.37	1e-80	299	Zea mays	Zm.3406.1.S1_at	AY566301.1	4-coumarate coenzyme A ligase	-	7e-2	At1g51680	4CL1 (4-COUMARATE:COA LIGASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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