Gene omics information

Query gene ID	Contig15831_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig15831_at	Contig15831	-	-	1e+0	At3g15190	chloroplast 30S ribosomal protein S20, putative	S.X.	H.G.	Please select
0.67	84.7	Contig9191_at	Contig9191	-	-	2e+0	At2g18200	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig13522_at	Contig13522	-	-	4e-17	At4g02630	protein kinase family protein	S.X.	H.G.	Please select
0.50	66.9	Contig11108_at	Contig11108	-	-	8e-4	At3g05545	transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein	S.X.	H.G.	Please select
0.44	58.9	Contig10540_at	Contig10540	-	-	7e-8	At3g57890	tubulin-specific chaperone C-related	S.X.	H.G.	Please select
0.21	22.6	rbah59f07_s_at	rbah59f07	-	-	4e+0	At3g24160	PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
52.8	100.0	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
52.8	100.0	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
26.4	99.8	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
26.4	99.8	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
21.7	99.8	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
20.6	99.7	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
20.6	99.7	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
19.7	99.7	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
19.7	99.7	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
16.4	99.6	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	2e-19	95	Contig6706_at	Contig6706	-	-	1e-1	At2g18480	mannitol transporter, putative	C.G.	S.X.	Please select
0.09	3e-9	61	Contig18517_at	Contig18517	-	-	1e-1	At2g18480	mannitol transporter, putative	C.G.	S.X.	Please select
0.06	3e-6	52	Contig13546_at	Contig13546	-	-	3e+0	At3g62528	unknown protein	C.G.	S.X.	Please select
0.07	1e-5	50	Contig6707_at	Contig6707	-	-	2e-11	At3g18830	ATPLT5 (POLYOL TRANSPORTER 5)	C.G.	S.X.	Please select
0.03	2e-4	46	Contig20863_at	Contig20863	-	-	1e+0	At2g15830	unknown protein	C.G.	S.X.	Please select
0.07	7e-4	44	Contig11005_s_at	Contig11005	-	-	3e+0	At1g24350	-	C.G.	S.X.	Please select
0.07	7e-4	44	Contig11005_at	Contig11005	-	-	3e+0	At1g24350	-	C.G.	S.X.	Please select
0.02	1e-2	40	Contig3023_s_at	Contig3023	-	-	2e-1	At3g49850	TRB3 (TELOMERE REPEAT BINDING FACTOR 3)	C.G.	S.X.	Please select
0.02	4e-2	38	Contig5401_s_at	Contig5401	-	-	1e-39	At1g03475	LIN2 (LESION INITIATION 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g15190	820750	chloroplast 30S ribosomal protein S20, putative	F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane;BOPM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	8e-3	42	Glycine max	GmaAffx.10373.1.S1_at	BI317721	-	-	2e-6	At2g18480	mannitol transporter, putative	C.G.	S.X.	Please select
0.40	0	728	Oryza sativa	Os03g0197100	AK070417.1	-	Sugar transporter protein	1e-3	At3g18830	ATPLT5 (POLYOL TRANSPORTER 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-1	36	Populus trichocarpa	PtpAffx.220441.1.S1_at	pmrna36832	hypothetical protein	-	1e+1	At1g73350	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	0	1122	Triticum aestivum	Ta.3603.1.S1_s_at	BJ213408	-	-	3e+0	At3g18830	ATPLT5 (POLYOL TRANSPORTER 5)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1613408_at	CB347178	hypothetical protein LOC100244004	-	7e+0	At5g20110	dynein light chain, putative	C.G.	S.X.	Please select
0.43	2e-114	410	Zea mays	Zm.15063.1.S1_at	BM269328	polyol transporter protein 4	-	3e+0	At2g40570	initiator tRNA phosphoribosyl transferase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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