Gene omics information

Query gene ID	Contig15767_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig15767_at	Contig15767	-	-	1e-1	At1g21520	unknown protein	S.X.	H.G.	Please select
0.80	92.5	Contig6235_s_at	Contig6235	-	-	1e+0	At3g27850	RPL12-C (ribosomal protein l12-c)	S.X.	H.G.	Please select
0.67	84.7	Contig6238_s_at	Contig6238	-	-	1e-7	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	S.X.	H.G.	Please select
0.61	78.7	Contig6233_s_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	S.X.	H.G.	Please select
0.32	40.3	Contig3365_at	Contig3365	-	-	2e-85	At1g09100	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	S.X.	H.G.	Please select
0.23	26.1	Contig145_at	Contig145	-	-	4e-10	At1g08880	H2AXA	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.2	99.7	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
17.4	99.6	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
16.9	99.6	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.3	99.6	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.8	99.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.9	99.2	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
9.5	99.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.4	99.0	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
7.0	98.4	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.3	98.1	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-2	40	Contig9764_at	Contig9764	-	-	7e+0	At4g13140	-	C.G.	S.X.	Please select
0.02	5e-2	38	Contig19205_at	Contig19205	-	-	7e+0	At4g32020	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig5175_at	Contig5175	-	-	4e-11	At5g19855	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	HVSMEg0015B10r2_at	HVSMEg0015B10r2	-	-	3e-1	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig8023_at	Contig8023	-	-	8e-50	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig12522_at	Contig12522	-	-	4e-11	At3g04880	DRT102 (DNA-DAMAGE-REPAIR/TOLERATION 2)	C.G.	S.X.	Please select
0.02	8e-1	34	Contig6797_at	Contig6797	-	-	7e+0	At4g19980	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig25015_at	Contig25015	-	-	4e-1	At5g22555	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig16057_at	Contig16057	-	-	2e+0	At5g01530	chlorophyll A-B binding protein CP29 (LHCB4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-1	38	Arabidopsis thaliana	At1g21520	838752	unknown protein	F:molecular_function unknown;P:response to oxidative stress, response to salt stress;C:endoplasmic reticulum;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-1	36	Glycine max	GmaAffx.22286.1.S1_at	BU551302	-	-	4e-6	At5g65300	unknown protein	C.G.	S.X.	Please select
0.35	5e-42	173	Oryza sativa	Os04g0577800	AU182546	-	Protein of unknown function UPF0136 family protein	4e-1	At2g22170	lipid-associated family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.220712.1.S1_at	pmrna37128	hypothetical protein	-	1e+0	At3g30430	F-box family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	2e-86	319	Triticum aestivum	TaAffx.132043.1.S1_at	CA636120	-	-	2e-1	At3g62990	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1618633_at	CF568894	-	-	7e-14	At1g65060	4CL3	C.G.	S.X.	Please select
0.32	6e-60	230	Zea mays	Zm.3426.1.A1_at	BM269425	protein kinase	-	6e+0	At3g04500	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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