Gene omics information

Query gene ID	Contig15752_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	93.1	Contig15752_s_at	Contig15752	-	-	5e+0	At1g61340	F-box family protein	S.X.	H.G.	Please select
0.70	86.0	Contig10720_at	Contig10720	-	-	1e-39	At1g22620	ATSAC1 (suppressor of actin 1)	S.X.	H.G.	Please select
0.56	74.3	Contig13241_at	Contig13241	-	-	2e+0	At2g06570	unknown protein	S.X.	H.G.	Please select
0.50	66.9	HVSMEc0005F13r2_at	HVSMEc0005F13r2	-	-	1e+0	At4g00950	MEE47 (maternal effect embryo arrest 47)	S.X.	H.G.	Please select
0.50	66.9	Contig14778_at	Contig14778	-	-	7e-10	At4g17640	CKB2	S.X.	H.G.	Please select
0.46	61.0	Contig15855_at	Contig15855	-	-	2e+0	At1g48325	Expressed protein	S.X.	H.G.	Please select
0.44	58.9	Contig1518_at	Contig1518	-	-	3e-2	At3g05950	germin-like protein, putative	S.X.	H.G.	Please select
0.43	56.4	EBro02_SQ006_L04_x_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	S.X.	H.G.	Please select
0.42	55.2	Contig19922_at	Contig19922	-	-	2e+1	At5g15460	MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)	S.X.	H.G.	Please select
0.42	55.2	Contig5004_at	Contig5004	-	-	9e-3	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
59.1	100.0	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
23.0	99.8	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
16.1	99.6	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
12.4	99.4	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
10.4	99.2	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
7.9	98.7	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.9	98.7	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.4	98.1	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.4	98.1	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.9	97.9	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	833	Contig15752_at	Contig15752	-	-	5e+0	At1g61340	F-box family protein	C.G.	S.X.	Please select
0.64	6e-112	402	HVSMEa0002K13r2_at	HVSMEa0002K13r2	-	-	7e-2	At2g26120	glycine-rich protein	C.G.	S.X.	Please select
0.01	4e-2	38	Contig3441_at	Contig3441	-	-	7e-14	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.04	6e-1	34	Contig13240_s_at	Contig13240	-	-	4e-1	At3g24750	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig8760_at	Contig8760	-	-	3e-3	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig3728_at	Contig3728	-	-	9e-28	At3g62560	GTP-binding protein, putative	C.G.	S.X.	Please select
0.02	6e-1	34	Contig3299_s_at	Contig3299	-	-	8e-47	At5g50850	MAB1 (MACCI-BOU)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig6797_at	Contig6797	-	-	7e+0	At4g19980	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig7036_at	Contig7036	-	-	1e-1	At1g57565	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At1g61340	842428	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e-3	42	Glycine max	PsAffx.psMA018xC13f_at	PsAffx.psMA018xC13f	-	-	1e+0	At5g60560	F-box family protein	C.G.	S.X.	Please select
0.25	1e-42	174	Oryza sativa	Os05g0476700	AY224537.1	-	U box domain containing protein	2e-2	At5g23100	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-2	40	Populus trichocarpa	PtpAffx.217136.1.S1_at	pmrna32282	hypothetical protein	-	8e+0	At3g55910	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	7e-24	111	Triticum aestivum	TaAffx.23653.1.S1_at	CA732236	-	-	7e-2	At1g54010	myrosinase-associated protein, putative	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1611924_at	CA817406	hypothetical protein LOC100244683	-	2e-9	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	C.G.	S.X.	Please select
0.03	4e-2	38	Zea mays	Zm.15818.1.S1_at	M73828.1	ferredoxin5	-	8e-2	At1g10960	ATFD1 (FERREDOXIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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