CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig15746_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 90.8 Contig15746_at Contig15746 - - 2e+0 At1g73890 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.45 59.3 Contig16959_at Contig16959 - - 9e-3 At3g48470 EMB2423 (EMBRYO DEFECTIVE 2423) S.X. H.G.
0.44 58.9 Contig15384_at Contig15384 - - 1e-11 At5g55580 mitochondrial transcription termination factor family protein / mTERF family protein S.X. H.G.
0.43 56.4 Contig17639_at Contig17639 - - 9e-1 At1g12423 unknown protein S.X. H.G.
0.39 50.5 Contig12223_at Contig12223 - - 4e-1 At1g09500 cinnamyl-alcohol dehydrogenase family / CAD family S.X. H.G.
0.38 49.5 Contig18471_at Contig18471 - - 2e+0 At1g76590 zinc-binding family protein S.X. H.G.
0.29 35.5 Contig8230_at Contig8230 - - 3e-24 At4g04860 DER2.2 (DERLIN-2.2) S.X. H.G.
0.28 35.5 HVSMEl0014E16r2_s_at HVSMEl0014E16r2 - - 2e+1 At4g03210 XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9) S.X. H.G.
0.26 30.4 Contig2342_at Contig2342 - - 3e-14 At5g04800 40S ribosomal protein S17 (RPS17D) S.X. H.G.
0.25 28.9 Contig12574_at Contig12574 - - 2e+0 At4g16100 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.9 97.1 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
4.8 97.0 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.5 96.7 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
4.3 96.4 GSM440967 Stressed palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
3.8 95.7 GSM440962 Stressed lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress
3.7 95.5 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
3.6 95.3 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.6 95.3 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
3.5 95.1 GSM419976 Palea_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
3.5 95.1 GSM440964 Control palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-2 38 Contig18315_at Contig18315 - - 3e-8 At2g18770 signal recognition particle binding C.G. S.X.
0.00 1e+0 34 Contig21662_at Contig21662 - - 1e+0 At5g11160 APT5 (Adenine phosphoribosyltransferase 5) C.G. S.X.
0.01 1e+0 34 Contig12526_at Contig12526 - - 9e-1 At5g23280 TCP family transcription factor, putative C.G. S.X.
0.02 4e+0 32 Contig3569_at Contig3569 - - 7e-18 At1g69620 RPL34 (RIBOSOMAL PROTEIN L34) C.G. S.X.
0.02 4e+0 32 HC114C07_SK_at HC114C07_SK - - 1e+0 At3g57190 peptide chain release factor, putative C.G. S.X.
0.02 4e+0 32 EBro02_SQ008_P15_at EBro02_SQ008_P15 - - 1e+1 At5g43211 unknown protein C.G. S.X.
0.02 4e+0 32 Contig26520_at Contig26520 - - 5e+0 At5g26610 D111/G-patch domain-containing protein C.G. S.X.
0.01 4e+0 32 Contig18256_at Contig18256 - - 9e-3 At3g07790 DGCR14-related C.G. S.X.
0.01 4e+0 32 Contig17726_at Contig17726 - - 4e-2 At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At1g73890 843727 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P - - - C.G. S.X.
0.03 7e-1 36 Glycine max GmaAffx.58697.1.S1_at BF324283 - - 8e-1 At5g01080 beta-galactosidase C.G. S.X.
0.24 4e-31 137 Oryza sativa Os04g0425100 AK111894.1 - The start codon is not identified. 1e+0 At5g62130 Per1-like protein-related C.G. S.X.
0.03 7e-1 36 Populus trichocarpa PtpAffx.221030.1.S1_s_at pmrna37573 hypothetical protein - 4e-2 At1g11250 SYP125 (SYNTAXIN OF PLANTS 125) C.G. S.X.
0.21 1e-44 180 Triticum aestivum TaAffx.86193.1.S1_at CA614701 - - 4e+0 At3g06760 - C.G. S.X.
0.03 6e-1 34 Vitis vinifera 1611163_at CF210269 - - 4e+0 At5g35540 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.9655.1.A1_at BM348132 - - 6e-3 At1g01130 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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