CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig15745_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.68 85.1 Contig15745_at Contig15745 - - 1e-1 At1g35830 VQ motif-containing protein S.X. H.G.
0.56 74.3 Contig15303_at Contig15303 - - 6e-1 At3g10860 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative S.X. H.G.
0.52 68.3 Contig8153_at Contig8153 - - 5e-42 At3g09550 protein binding S.X. H.G.
0.49 63.7 Contig3497_s_at Contig3497 - - 4e+0 At5g67190 AP2 domain-containing transcription factor, putative S.X. H.G.
0.45 59.3 Contig10338_at Contig10338 - - 4e-2 At5g54900 ATRBP45A (RNA-binding protein 45A) S.X. H.G.
0.41 53.9 Contig10534_s_at Contig10534 - - 3e-7 At3g14080 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative S.X. H.G.
0.39 50.5 Contig11793_at Contig11793 - - 9e-9 At5g07910 leucine-rich repeat family protein S.X. H.G.
0.39 50.5 Contig3125_at Contig3125 - - 2e-15 At4g02570 ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) S.X. H.G.
0.34 43.6 Contig18051_at Contig18051 - - 4e-1 At1g75250 ATRL6 (ARABIDOPSIS RAD-LIKE 6) S.X. H.G.
0.34 43.6 Contig20549_at Contig20549 - - 2e-27 At2g39480 PGP6 (P-GLYCOPROTEIN 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.4 99.2 GSM282034 Malting_steeped_Morex_rep1 GSE11200 Expression data from malting barley seeds
9.5 99.0 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
8.2 98.7 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
7.9 98.7 GSM213436 Barley seeds with P. aeruginosa PAO1 for 12hr GSE8618 P. aeruginosa virulent factor to barley
6.4 98.1 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0 97.9 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6 97.7 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.4 97.5 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.4 96.6 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 40 HV_CEb0008N01r2_at HV_CEb0008N01r2 - - 3e-1 At5g62360 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.04 2e-2 40 Contig10247_at Contig10247 - - 2e-8 At5g49980 AFB5 (Auxin F-Box protein 5) C.G. S.X.
0.01 7e-2 38 Contig7292_s_at Contig7292 - - 3e+0 At4g37980 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) C.G. S.X.
0.02 7e-2 38 HM05N11r_at HM05N11r - - 9e-1 At2g40085 unknown protein C.G. S.X.
0.02 7e-2 38 Contig440_s_at Contig440 - - 4e-10 At1g08880 H2AXA C.G. S.X.
0.02 7e-2 38 rbaal25k20_at rbaal25k20 - - 1e+0 At2g40085 unknown protein C.G. S.X.
0.02 7e-2 38 Contig19854_s_at Contig19854 - - 2e+0 At2g40085 unknown protein C.G. S.X.
0.02 7e-2 38 Contig19854_at Contig19854 - - 2e+0 At2g40085 unknown protein C.G. S.X.
0.01 3e-1 36 Contig12106_at Contig12106 - - 3e-6 At4g21460 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 38 Arabidopsis thaliana At1g35830 840485 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFVB - - - C.G. S.X.
0.02 2e-1 38 Glycine max GmaAffx.17366.1.S1_at BM568101 - - 4e-2 At5g49980 AFB5 (Auxin F-Box protein 5) C.G. S.X.
0.38 3e-115 416 Oryza sativa Os03g0187500 AK059536.1 - Leucine-rich repeat, cysteine-containing subtypecontaining protein 5e-3 At5g49980 AFB5 (Auxin F-Box protein 5) C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.219817.1.S1_at pmrna35942 hypothetical protein - 6e-1 At2g11910 unknown protein C.G. S.X.
0.71 0 926 Triticum aestivum TaAffx.37038.1.S1_at BQ168635 - - 2e+0 At4g24390 F-box family protein (FBX14) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1615642_at CB345328 - - 4e+0 At5g54740 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.05 2e-1 36 Zea mays Zm.5990.1.S1_a_at AY111300.1 - - 2e-6 At5g49980 AFB5 (Auxin F-Box protein 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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