Gene omics information

Query gene ID	Contig15729_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig15729_at	Contig15729	-	-	3e-2	At3g11280	myb family transcription factor	S.X.	H.G.	Please select
0.83	94.0	Contig7120_at	Contig7120	-	-	4e-18	At1g55880	pyridoxal-5'-phosphate-dependent enzyme, beta family protein	S.X.	H.G.	Please select
0.71	87.1	Contig7301_at	Contig7301	-	-	3e-1	At5g26070	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.67	84.7	Contig327_s_at	Contig327	-	-	2e-2	At2g23310	ATRER1C1	S.X.	H.G.	Please select
0.61	78.7	Contig4455_at	Contig4455	-	-	5e-1	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	S.X.	H.G.	Please select
0.50	66.9	Contig3480_at	Contig3480	-	-	4e-1	At5g16660	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
75.3	100.0	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
71.6	100.0	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
46.1	99.9	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
21.9	99.8	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
21.3	99.7	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
19.4	99.7	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
19.4	99.7	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
16.5	99.6	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
15.3	99.6	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
15.3	99.6	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	2e-20	99	Contig12811_at	Contig12811	-	-	3e-5	At5g01200	myb family transcription factor	C.G.	S.X.	Please select
0.06	5e-15	81	Contig6946_at	Contig6946	-	-	1e-5	At5g01200	myb family transcription factor	C.G.	S.X.	Please select
0.11	5e-15	81	Contig15670_at	Contig15670	-	-	5e-1	At2g38090	myb family transcription factor	C.G.	S.X.	Please select
0.07	5e-12	71	Contig5771_at	Contig5771	-	-	1e-2	At5g58900	myb family transcription factor	C.G.	S.X.	Please select
0.11	3e-7	56	Contig14119_at	Contig14119	-	-	3e-5	At1g49010	myb family transcription factor	C.G.	S.X.	Please select
0.03	3e-4	46	HZ42B13r_at	HZ42B13r	-	-	9e-1	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	C.G.	S.X.	Please select
0.03	1e-3	44	Contig4306_s_at	Contig4306	-	-	6e+0	At4g38740	ROC1 (ROTAMASE CYP 1)	C.G.	S.X.	Please select
0.02	4e-3	42	Contig20989_at	Contig20989	-	-	1e-1	At5g47330	palmitoyl protein thioesterase family protein	C.G.	S.X.	Please select
0.02	4e-3	42	Contig17301_at	Contig17301	-	-	1e-2	At1g28280	VQ motif-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-2	40	Arabidopsis thaliana	At3g11280	820299	myb family transcription factor	Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-4	48	Glycine max	Gma.593.3.S1_a_at	CA801787	MYB transcription factor MYB173 /// MYB transcription factor MYB176	-	6e-12	At1g74840	myb family transcription factor	C.G.	S.X.	Please select
0.36	3e-44	180	Oryza sativa	Os05g0442400	AK107134.1	-	Transcription factor MYBS3	2e+0	At5g04760	myb family transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.105756.1.S1_at	BP931825	hypothetical protein	-	2e+0	At3g16350	myb family transcription factor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	7e-99	361	Triticum aestivum	TaAffx.23509.1.S1_at	CA734150	-	-	1e+0	Atmg01350	-	C.G.	S.X.	Please select
0.03	4e-2	38	Vitis vinifera	1613486_at	CF215097	hypothetical protein LOC100253576	-	1e-20	At1g70000	DNA-binding family protein	C.G.	S.X.	Please select
0.20	8e-63	240	Zea mays	Zm.18132.1.S1_at	CN844872	-	-	2e-1	At5g58900	myb family transcription factor	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage