Gene omics information

Query gene ID	Contig15661_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig15661_at	Contig15661	-	-	5e-17	At4g17530	ATRAB1C	S.X.	H.G.	Please select
0.67	84.7	Contig24094_at	Contig24094	-	-	1e+0	At1g19115	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig14241_at	Contig14241	-	-	2e+0	At3g16250	NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)	S.X.	H.G.	Please select
0.55	72.0	Contig15481_at	Contig15481	-	-	2e+0	At3g54170	ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)	S.X.	H.G.	Please select
0.46	61.0	Contig19575_at	Contig19575	-	-	5e-1	At4g15630	integral membrane family protein	S.X.	H.G.	Please select
0.16	15.3	HX01C23w_s_at	HX01C23w	-	-	5e+0	At5g17165	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.1	99.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
32.2	99.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
19.1	99.7	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
19.1	99.7	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
17.1	99.6	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
17.1	99.6	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
16.7	99.6	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
16.1	99.6	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
15.9	99.6	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.5	99.5	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	9e-54	210	Contig2537_at	Contig2537	-	-	1e-29	At3g11730	ATFP8	C.G.	S.X.	Please select
0.10	6e-21	101	Contig2536_at	Contig2536	-	-	5e-1	At2g32360	ubiquitin family protein	C.G.	S.X.	Please select
0.08	2e-15	83	Contig4864_at	Contig4864	-	-	2e-40	At4g17530	ATRAB1C	C.G.	S.X.	Please select
0.04	9e-14	77	Contig2393_at	Contig2393	-	-	9e-31	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select
0.04	9e-14	77	Contig2377_s_at	Contig2377	-	-	1e-29	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select
0.08	4e-13	75	Contig4867_s_at	Contig4867	-	-	8e-43	At4g17530	ATRAB1C	C.G.	S.X.	Please select
0.04	8e-8	57	Contig3170_at	Contig3170	-	-	4e-45	At1g07410	ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B)	C.G.	S.X.	Please select
0.04	8e-8	57	Contig3166_at	Contig3166	-	-	3e-49	At1g07410	ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B)	C.G.	S.X.	Please select
0.04	3e-7	56	Contig3169_at	Contig3169	-	-	2e-13	At1g16920	ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	5e-17	89	Arabidopsis thaliana	At4g17530	827468	ATRAB1C	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, vacuole, membrane;MOFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	7e-23	109	Glycine max	Gma.1814.1.S1_at	L14929.1	-	-	4e-57	At3g11730	ATFP8	C.G.	S.X.	Please select
0.37	8e-107	389	Oryza sativa	Os.51115.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	5e-24	113	Populus trichocarpa	PtpAffx.30207.1.S1_s_at	CV257448	hypothetical protein	-	2e-61	At3g11730	ATFP8	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.72	0	961	Triticum aestivum	TaAffx.87061.1.S1_at	BJ306226	-	-	2e-21	At3g11730	ATFP8	C.G.	S.X.	Please select
0.26	1e-45	182	Vitis vinifera	1616648_at	CF517228	hypothetical protein LOC100254021	-	1e-78	At3g11730	ATFP8	C.G.	S.X.	Please select
0.44	2e-138	492	Zea mays	Zm.188.1.S1_s_at	CF017153	yptm1 protein	-	2e-34	At3g11730	ATFP8	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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