Gene omics information

Query gene ID	Contig15627_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig15627_s_at	Contig15627	-	-	4e+0	At5g15802	unknown protein	S.X.	H.G.	Please select
0.60	77.3	HU03K03u_at	HU03K03u	-	-	5e+0	At5g58640	selenoprotein-related	S.X.	H.G.	Please select
0.40	53.1	Contig16402_at	Contig16402	-	-	2e+0	At2g06530	VPS2.1	S.X.	H.G.	Please select
0.20	21.1	Contig23379_at	Contig23379	-	-	9e-2	At2g02020	proton-dependent oligopeptide transport (POT) family protein	S.X.	H.G.	Please select
0.17	16.9	Contig21025_at	Contig21025	-	-	7e-2	At2g16340	unknown protein	S.X.	H.G.	Please select
0.08	6.5	HVSMEk0017M22r2_at	HVSMEk0017M22r2	-	-	1e+0	At2g34440	AGL29 (AGAMOUS-LIKE 29)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.4	99.0	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.0	98.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
6.7	98.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
6.2	98.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
5.7	97.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.7	96.9	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	5e-158	555	Contig15626_at	Contig15626	-	-	2e+0	At2g22330	CYP79B3	C.G.	S.X.	Please select
0.02	3e-2	38	Contig6408_at	Contig6408	-	-	6e-1	At1g21900	emp24/gp25L/p24 family protein	C.G.	S.X.	Please select
0.03	2e+0	32	HX13C19r_at	HX13C19r	-	-	3e+0	At5g35945	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig18926_at	Contig18926	-	-	5e-1	At5g37720	RNA and export factor-binding protein, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Contig14442_at	Contig14442	-	-	6e+0	At5g53420	-	C.G.	S.X.	Please select
0.02	2e+0	32	Contig12040_at	Contig12040	-	-	2e-1	At4g29570	cytidine deaminase, putative / cytidine aminohydrolase, putative	C.G.	S.X.	Please select
0.01	2e+0	32	Contig9634_at	Contig9634	-	-	1e+0	At5g13750	ZIFL1 (ZINC INDUCED FACILITATOR-like 1)	C.G.	S.X.	Please select
0.04	7e+0	30	rbags15p13_s_at	rbags15p13	-	-	2e+0	At5g58140	PHOT2 (PHOTOTROPIN 2)	C.G.	S.X.	Please select
0.02	7e+0	30	Contig3507_at	Contig3507	-	-	1e-66	At3g55620	emb1624 (embryo defective 1624)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At5g15802	831437	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	9e-2	38	Glycine max	PsAffx.psHB038xB23f_at	PsAffx.psHB038xB23f	-	-	3e+0	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	Os08g0358300	9636.m02659	-	-	4e+0	At4g23010	UDP-galactose transporter-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Populus trichocarpa	PtpAffx.95154.1.A1_at	CV257869	-	-	2e-1	At1g10230	ASK18 (ARABIDOPSIS SKP1-LIKE 18)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	Ta.27978.1.S1_at	CD923669	-	-	2e-1	At2g02880	mucin-related	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1615891_at	CF513223	hypothetical protein LOC100240779	-	2e-1	At3g25050	XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.8114.1.A1_at	BM072985	-	-	1e+0	At4g21220	bacterial transferase hexapeptide repeat-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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