CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig15613_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 93.1 Contig15613_at Contig15613 - - 7e-16 At3g48860 unknown protein S.X. H.G.
0.80 92.5 Contig10380_x_at Contig10380 - - 4e-1 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative S.X. H.G.
0.79 91.4 HA12A08u_s_at HA12A08u - - 5e-2 At1g22780 PFL (POINTED FIRST LEAVES) S.X. H.G.
0.78 91.2 Contig19629_at Contig19629 - - 1e-26 At1g80900 magnesium transporter CorA-like family protein (MGT1) (MRS2) S.X. H.G.
0.76 89.8 Contig6681_at Contig6681 - - 4e+0 At5g63460 SAP domain-containing protein S.X. H.G.
0.76 89.8 HI05M04r_s_at HI05M04r - - 1e-23 At2g33370 60S ribosomal protein L23 (RPL23B) S.X. H.G.
0.73 88.7 HA03D07u_s_at HA03D07u - - 1e-1 At5g15530 BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2) S.X. H.G.
0.72 87.4 EBpi03_SQ003_A03_s_at EBpi03_SQ003_A03 - - 6e-4 At2g33370 60S ribosomal protein L23 (RPL23B) S.X. H.G.
0.71 87.1 Contig3541_s_at Contig3541 - - 2e-5 At2g36390 SBE2.1 (starch branching enzyme 2.1) S.X. H.G.
0.70 86.0 Contig2975_s_at Contig2975 - - 2e+0 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.6 99.3 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.8 99.1 GSM372954 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.3 98.8 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
8.3 98.8 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
7.7 98.6 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
6.5 98.2 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
6.4 98.1 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
6.2 98.0 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
6.1 98.0 GSM372949 genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.0 97.9 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-3 42 Contig11844_at Contig11844 - - 2e+0 At2g05645 unknown protein C.G. S.X.
0.02 7e-2 38 Contig26351_at Contig26351 - - 1e+0 At4g12820 F-box family protein C.G. S.X.
0.01 3e-1 36 Contig1618_at Contig1618 - - 1e-64 At3g60750 transketolase, putative C.G. S.X.
0.02 3e-1 36 Contig9902_at Contig9902 - - 2e+0 At5g35170 adenylate kinase family protein C.G. S.X.
0.03 3e-1 36 HW04M05u_x_at HW04M05u - - 8e-2 At5g23411 unknown protein C.G. S.X.
0.08 3e-1 36 Contig14969_at Contig14969 - - 9e-2 At3g48860 unknown protein C.G. S.X.
0.02 1e+0 34 Contig14852_at Contig14852 - - 2e+0 At1g47250 PAF2 C.G. S.X.
0.01 1e+0 34 Contig13234_at Contig13234 - - 1e+0 At2g20710 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 1e+0 34 Contig6267_at Contig6267 - - 2e-7 At5g16880 VHS domain-containing protein / GAT domain-containing protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 7e-16 85 Arabidopsis thaliana At3g48860 824047 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;MOFBPAV - - - C.G. S.X.
0.04 5e-5 50 Glycine max Gma.5259.1.S1_at BI967317 - - 6e-9 At4g25070 unknown protein C.G. S.X.
0.47 2e-128 460 Oryza sativa Os.26757.1.A1_at - - - 0 C.G. S.X.
0.10 1e-8 61 Populus trichocarpa PtpAffx.212921.1.S1_s_at pmrna25278 hypothetical protein - 4e-27 At3g48860 unknown protein C.G. S.X.
0.78 0 1005 Triticum aestivum Ta.12977.1.S1_at BE213668 - - 4e-18 At3g48860 unknown protein C.G. S.X.
0.04 1e-2 40 Vitis vinifera 1617837_at CB972171 hypothetical protein LOC100260846 - 1e-12 At5g13260 unknown protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.8562.1.A1_s_at CA403409 - - 1e+0 At2g33255 catalytic/ hydrolase/ phosphoglycolate phosphatase C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage