CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig1557_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 66.9 Contig1557_at Contig1557 - - 3e-23 At3g60245 60S ribosomal protein L37a (RPL37aC) S.X. H.G.
0.27 32.1 Contig6213_x_at Contig6213 - - 8e-4 At1g05850 POM1 (POM-POM1) S.X. H.G.
0.14 12.9 Contig8411_at Contig8411 - - 2e-1 At3g58630 transcription factor S.X. H.G.
0.11 9.4 Contig1604_at Contig1604 - - 1e-10 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) S.X. H.G.
0.08 6.5 HVSMEf0014I15r2_x_at HVSMEf0014I15r2 - - 2e+0 At5g48000 CYP708A2 S.X. H.G.
0.06 4.8 HVSMEk0002P01f_x_at HVSMEk0002P01f - - 4e+0 At5g60960 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.05 4.1 Contig15375_at Contig15375 - - 2e+0 At5g49410 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 98.6 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
5.8 97.8 GSM261040 Dicktoo-deacclimation-rep2 GSE10329 Low temperature stress in cv. Dicktoo
5.4 97.5 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
5.4 97.5 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.8 97.0 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.5 96.7 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
4.2 96.3 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2 96.3 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
4.0 96.0 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress
3.9 95.8 GSM161220 cold treatment rep2 GSE6993 Barley low temperature stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.87 0 866 Contig1549_s_at Contig1549 - - 2e-29 At3g10950 60S ribosomal protein L37a (RPL37aB) C.G. S.X.
0.45 7e-84 309 Contig1547_s_at Contig1547 - - 2e-32 At3g60245 60S ribosomal protein L37a (RPL37aC) C.G. S.X.
0.42 3e-80 297 Contig1556_s_at Contig1556 - - 2e-20 At3g10950 60S ribosomal protein L37a (RPL37aB) C.G. S.X.
0.42 3e-80 297 Contig1556_at Contig1556 - - 2e-20 At3g10950 60S ribosomal protein L37a (RPL37aB) C.G. S.X.
0.41 3e-80 297 Contig1555_at Contig1555 - - 3e-20 At3g10950 60S ribosomal protein L37a (RPL37aB) C.G. S.X.
0.03 4e-2 38 Contig6280_at Contig6280 - - 1e+0 At4g23870 unknown protein C.G. S.X.
0.02 4e-2 38 Contig10248_at Contig10248 - - 1e-1 At5g14070 ROXY2 C.G. S.X.
0.02 6e-1 34 Contig10421_at Contig10421 - - 2e+0 At1g34380 5'-3' exonuclease family protein C.G. S.X.
0.01 6e-1 34 Contig4805_at Contig4805 - - 3e-7 At1g07230 hydrolase, acting on ester bonds C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 3e-23 109 Arabidopsis thaliana At3g60245 825195 60S ribosomal protein L37a (RPL37aC) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFP - - - C.G. S.X.
0.27 4e-20 99 Glycine max Gma.16150.1.S1_at CD399557 - - 4e-31 At3g10950 60S ribosomal protein L37a (RPL37aB) C.G. S.X.
0.43 2e-75 284 Oryza sativa Os01g0679700 AK119702.1 - 60S ribosomal protein L37a 1e-15 At3g10950 60S ribosomal protein L37a (RPL37aB) C.G. S.X.
0.28 6e-28 125 Populus trichocarpa Ptp.4441.1.S1_x_at CV283857 - - 7e-46 At3g10950 60S ribosomal protein L37a (RPL37aB) C.G. S.X.
0.64 2e-132 472 Triticum aestivum Ta.28426.1.S1_a_at BJ231744 - - 5e-16 At3g10950 60S ribosomal protein L37a (RPL37aB) C.G. S.X.
0.27 2e-27 121 Vitis vinifera 1615465_at CB345869 similar to protein synthesis initiation factor-like - 7e-33 At3g10950 60S ribosomal protein L37a (RPL37aB) C.G. S.X.
0.41 2e-65 248 Zea mays Zm.5930.1.S1_at CF018694 60S ribosomal protein L37a /// 60S ribosomal protein L37a - 2e-33 At3g60245 60S ribosomal protein L37a (RPL37aC) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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