CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig15509_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 72.0 Contig15509_at Contig15509 - - 2e-3 At1g10522 unknown protein S.X. H.G.
0.64 80.9 Contig25651_at Contig25651 - - 5e-1 At2g41225 unknown protein S.X. H.G.
0.63 80.3 HV_CEa0014A19r2_at HV_CEa0014A19r2 - - 3e+0 At1g58160 jacalin lectin family protein S.X. H.G.
0.47 62.2 Contig13168_at Contig13168 - - 3e+0 At5g50130 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.44 58.9 Contig25401_at Contig25401 - - 4e-3 At1g78710 unknown protein S.X. H.G.
0.42 55.2 Contig18328_at Contig18328 - - 5e-1 Atmg00110 - S.X. H.G.
0.40 53.1 Contig6491_at Contig6491 - - 6e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein S.X. H.G.
0.36 47.1 Contig8925_at Contig8925 - - 3e+0 At5g66060 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors S.X. H.G.
0.35 45.1 Contig15411_at Contig15411 - - 2e-4 At5g49890 CLC-C (CHLORIDE CHANNEL C) S.X. H.G.
0.28 35.5 Contig20549_at Contig20549 - - 2e-27 At2g39480 PGP6 (P-GLYCOPROTEIN 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.3 98.1 GSM68891 3 h control replicate 3 GSE3097 Barley1 salinity stress study
6.2 98.0 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
6.0 97.9 GSM261032 Dicktoo control-rep3 GSE10329 Low temperature stress in cv. Dicktoo
6.0 97.9 GSM261026 ABA-Early-rep3 GSE10328 ABA experiment
6.0 97.9 GSM68897 8 h control replicate 3 GSE3097 Barley1 salinity stress study
5.9 97.9 GSM130800 control, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
5.9 97.9 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
5.8 97.8 GSM261030 Dicktoo-control-rep1 GSE10329 Low temperature stress in cv. Dicktoo
5.7 97.7 GSM146376 Maythorpe shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.6 97.7 GSM261039 Dicktoo-deacclimation-rep1 GSE10329 Low temperature stress in cv. Dicktoo
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 36 Contig12802_at Contig12802 - - 2e+0 At2g34850 MEE25 (maternal effect embryo arrest 25) C.G. S.X.
0.02 7e-1 34 Contig5237_at Contig5237 - - 7e-7 At1g08570 ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4) C.G. S.X.
0.03 7e-1 34 HVSMEm0012J18r2_at HVSMEm0012J18r2 - - 3e-1 At3g03000 calmodulin, putative C.G. S.X.
0.03 7e-1 34 Contig24253_at Contig24253 - - 4e+0 At4g25433 peptidoglycan-binding LysM domain-containing protein C.G. S.X.
0.02 7e-1 34 Contig23396_at Contig23396 - - 2e+0 At5g46730 glycine-rich protein C.G. S.X.
0.02 7e-1 34 Contig15201_at Contig15201 - - 8e+0 At5g40382 cytochrome-c oxidase C.G. S.X.
0.01 7e-1 34 Contig13227_at Contig13227 - - 2e-1 At3g52380 CP33 C.G. S.X.
0.01 7e-1 34 Contig5341_at Contig5341 - - 8e-4 At5g45930 CHLI2 (MAGNESIUM CHELATASE I2) C.G. S.X.
0.02 3e+0 32 Contig15869_at Contig15869 - - 5e-1 At1g32240 KAN2 (KANADI 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-3 44 Arabidopsis thaliana At1g10522 837593 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P - - - C.G. S.X.
0.03 1e-1 38 Glycine max GmaAffx.72042.1.S1_at BQ273366 - - 2e-9 At1g45110 tetrapyrrole methylase family protein C.G. S.X.
0.41 1e-76 287 Oryza sativa Os09g0382400 AK062891.1 - Conserved hypothetical protein 4e-1 At1g10522 unknown protein C.G. S.X.
0.03 1e-1 38 Populus trichocarpa PtpAffx.5122.6.A1_at CV272959 hypothetical protein - 7e-5 At5g24510 60s acidic ribosomal protein P1, putative C.G. S.X.
0.78 1e-176 619 Triticum aestivum Ta.7635.1.A1_at BG907453 - - 8e-2 At1g10522 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1616129_at CA810707 - - 3e+0 At1g59700 ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16) C.G. S.X.
0.39 5e-94 343 Zea mays Zm.11815.1.A1_a_at BM380954 hypothetical protein LOC100278908 - 4e-1 At2g07706 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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