Gene omics information

Query gene ID	Contig15465_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig15465_at	Contig15465	-	-	2e-2	At2g39550	PGGT-I	S.X.	H.G.	Please select
0.40	53.1	Contig5213_at	Contig5213	-	-	2e-11	At5g61020	ECT3	S.X.	H.G.	Please select
0.36	47.1	Contig8442_at	Contig8442	-	-	5e-24	At1g34470	permease-related	S.X.	H.G.	Please select
0.25	28.9	Contig5688_at	Contig5688	-	-	1e-5	At5g07500	PEI1	S.X.	H.G.	Please select
0.12	10.4	Contig23773_at	Contig23773	-	-	1e+0	At5g14070	ROXY2	S.X.	H.G.	Please select
0.07	5.8	Contig3668_at	Contig3668	-	-	5e-1	At5g02030	RPL (REPLUMLESS)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	98.1	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3	98.1	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1	98.0	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM372960	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4	96.6	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
4.3	96.4	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	HU14O16u_s_at	HU14O16u	-	-	7e-2	At5g24400	emb2024 (embryo defective 2024)	C.G.	S.X.	Please select
0.03	2e+0	32	HV_CEb0010C12r2_at	HV_CEb0010C12r2	-	-	8e-2	At5g14105	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig3884_at	Contig3884	-	-	1e+0	At1g69880	ATH8 (thioredoxin H-type 8)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig3181_at	Contig3181	-	-	4e-16	At5g67030	ABA1 (ABA DEFICIENT 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig8965_at	Contig8965	-	-	7e+0	At5g28010	Bet v I allergen family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig8716_at	Contig8716	-	-	3e-5	At1g37130	NIA2 (NITRATE REDUCTASE 2)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig18306_at	Contig18306	-	-	8e-2	At3g49270	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig13113_at	Contig13113	-	-	1e-2	At5g02760	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig12805_at	Contig12805	-	-	1e-1	At5g19540	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-2	40	Arabidopsis thaliana	At2g39550	818540	PGGT-I	encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.88725.1.A1_at	CK605999	-	-	1e-18	At4g29390	40S ribosomal protein S30 (RPS30B)	C.G.	S.X.	Please select
0.12	1e-11	71	Oryza sativa	Os01g0150100	AK071085.1	-	Geranylgeranyltransferase beta subunit	3e-10	At2g39550	PGGT-I	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	Ptp.6809.1.S1_at	BU834090	auxin efflux carrier component /// auxin efflux carrier component	-	6e-33	At1g23080	PIN7 (PIN-FORMED 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.82015.1.S1_at	CA678839	-	-	1e+1	At1g51700	ADOF1	C.G.	S.X.	Please select
0.04	5e+0	30	Vitis vinifera	1621014_at	CF212114	hypothetical protein LOC100258834	-	2e+0	At3g06760	-	C.G.	S.X.	Please select
0.04	8e+0	30	Zea mays	Zm.889.3.S1_at	AI834601	-	-	3e-4	At4g38740	ROC1 (ROTAMASE CYP 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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