CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig15427_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 77.3 Contig15427_at Contig15427 - - 7e+0 At4g29110 unknown protein S.X. H.G.
0.89 95.4 HA07k01r_at HA07k01r - - 1e+0 At3g48640 unknown protein S.X. H.G.
0.70 86.0 Contig2339_at Contig2339 - - 5e-12 At4g15000 60S ribosomal protein L27 (RPL27C) S.X. H.G.
0.64 80.9 Contig9561_at Contig9561 - - 1e+1 At4g15780 ATVAMP724 S.X. H.G.
0.63 80.3 HU14G08u_s_at HU14G08u - - 3e-1 At5g38400 unknown protein S.X. H.G.
0.60 77.3 HX05P09r_at HX05P09r - - 9e-1 At5g60350 unknown protein S.X. H.G.
0.57 74.9 Contig17982_at Contig17982 - - 2e+1 At5g05340 peroxidase, putative S.X. H.G.
0.53 69.7 Contig15728_at Contig15728 - - 2e+0 At3g21215 RNA-binding protein, putative S.X. H.G.
0.48 63.2 Contig19065_at Contig19065 - - 1e+0 At5g58787 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.44 58.9 Contig12675_s_at Contig12675 - - 1e+0 At4g28150 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.8 97.8 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.0 96.0 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6 95.3 GSM261069 Albina f-17 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5 95.1 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2 94.3 GSM160822 38% SWC rep3 GSE6990 Barley drought stress
3.1 94.1 GSM261030 Dicktoo-control-rep1 GSE10329 Low temperature stress in cv. Dicktoo
3.0 93.8 GSM261023 ABA-Control-rep3 GSE10328 ABA experiment
2.7 92.7 GSM261041 Dicktoo-deacclimation-rep3 GSE10329 Low temperature stress in cv. Dicktoo
2.6 92.3 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
2.6 92.3 GSM160464 drought control rep1 GSE6990 Barley drought stress
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.67 0 833 Contig15426_s_at Contig15426 - - 5e+0 At4g18070 unknown protein C.G. S.X.
0.02 8e-1 34 Contig17772_at Contig17772 - - 4e-1 At3g57900 unknown protein C.G. S.X.
0.01 8e-1 34 Contig5196_at Contig5196 - - 2e-24 At4g02120 CTP synthase, putative / UTP--ammonia ligase, putative C.G. S.X.
0.02 8e-1 34 Contig23264_at Contig23264 - - 2e+0 At1g12650 unknown protein C.G. S.X.
0.02 8e-1 34 Contig8628_at Contig8628 - - 6e-1 At1g64370 unknown protein C.G. S.X.
0.02 8e-1 34 Contig1834_at Contig1834 - - 2e-2 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) C.G. S.X.
0.01 3e+0 32 Contig4535_at Contig4535 - - 2e-42 At4g31490 coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative C.G. S.X.
0.02 3e+0 32 Contig3351_s_at Contig3351 - - 2e-30 At4g35830 aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) C.G. S.X.
0.02 3e+0 32 Contig25024_at Contig25024 - - 2e+1 At5g51860 MADS-box protein (AGL72) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e+0 32 Arabidopsis thaliana At4g29110 829032 unknown protein F:molecular_function unknown;P:response to chitin;C:vacuole;P - - - C.G. S.X.
0.03 6e-1 36 Glycine max Gma.4111.4.A1_a_at BI426730 - - 3e+0 At4g29300 LCR27 (Low-molecular-weight cysteine-rich 27) C.G. S.X.
0.33 5e-36 153 Oryza sativa Os10g0141800 CB635416 - Cyclin-like F-box domain containing protein 3e+0 At3g22840 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) C.G. S.X.
0.03 2e-1 38 Populus trichocarpa Ptp.680.1.A1_at CK087539 - - 5e-2 At2g03500 myb family transcription factor C.G. S.X.
0.21 3e-73 276 Triticum aestivum TaAffx.106231.1.S1_at CA713512 - - 2e+0 At1g43190 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1612991_at CF568928 - - 4e-6 At4g16990 RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3) C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.1125.1.A1_at AW288880 - - 3e+0 At5g57520 ZFP2 (ZINC FINGER PROTEIN 2) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage