Gene omics information

Query gene ID	Contig15382_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig15382_at	Contig15382	-	-	7e+0	Atmg00550	-	S.X.	H.G.	Please select
0.50	66.9	Contig26573_at	Contig26573	-	-	7e-4	At1g31260	ZIP10 (ZINC TRANSPORTER 10 PRECURSOR)	S.X.	H.G.	Please select
0.50	66.9	Contig12778_at	Contig12778	-	-	2e-3	At1g76730	5-formyltetrahydrofolate cyclo-ligase family protein	S.X.	H.G.	Please select
0.40	53.1	Contig22652_at	Contig22652	-	-	4e-1	At2g19050	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select
0.40	53.1	Contig14258_at	Contig14258	-	-	5e+0	At1g30800	-	S.X.	H.G.	Please select
0.30	37.0	Contig12107_at	Contig12107	-	-	2e-10	At5g22000	RHF2A (RING-H2 GROUP F2A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.0	99.5	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
15.0	99.5	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
10.9	99.2	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
10.9	99.2	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.4	98.1	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.9	97.9	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.9	97.9	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.6	97.7	GSM419980	Awn_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.6	97.7	GSM440971	Control awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-2	38	Contig6096_at	Contig6096	-	-	7e-30	At5g09590	MTHSC70-2 (MITOCHONDRIAL HSP70 2)	C.G.	S.X.	Please select
0.03	6e-2	38	Contig6459_at	Contig6459	-	-	1e+0	At5g03995	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig7849_at	Contig7849	-	-	7e-2	At3g28200	peroxidase, putative	C.G.	S.X.	Please select
0.02	9e-1	34	Contig21290_at	Contig21290	-	-	2e+0	At5g01910	unknown protein	C.G.	S.X.	Please select
0.03	9e-1	34	HM02J14u_at	HM02J14u	-	-	4e+1	At5g62165	AGL42 (AGAMOUS LIKE 42)	C.G.	S.X.	Please select
0.01	9e-1	34	Contig12480_at	Contig12480	-	-	9e-7	At1g30680	toprim domain-containing protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig3326_s_at	Contig3326	-	-	8e+0	At5g01300	phosphatidylethanolamine-binding family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig2958_at	Contig2958	-	-	3e+0	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig3176_at	Contig3176	-	-	1e-18	At3g51800	ATG2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e+0	32	Arabidopsis thaliana	Atmg00550	-	-	hypothetical protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	GmaAffx.60672.1.S1_at	BU080558	G-box binding factor (GBF1)	-	3e+0	At5g17570	tatD-related deoxyribonuclease family protein	C.G.	S.X.	Please select
0.16	3e-25	117	Oryza sativa	Os07g0265100	AK111251.1	-	Hypothetical protein	4e+0	At2g07310	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-1	36	Populus trichocarpa	Ptp.4438.1.S1_s_at	CV275339	hypothetical protein	-	4e-10	At2g21195	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.67	5e-121	434	Triticum aestivum	Ta.13976.1.S1_a_at	BQ172016	-	-	4e+0	At5g23100	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1620940_at	CF201899.1	-	-	2e+1	At5g66990	RWP-RK domain-containing protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zea mays	Zm.1288.3.A1_s_at	BM341259	Calreticulin2	-	2e-15	At1g09210	calreticulin 2 (CRT2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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