Gene omics information

Query gene ID	Contig15375_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig15375_at	Contig15375	-	-	2e+0	At5g49410	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig7506_at	Contig7506	-	-	2e-39	At3g23310	protein kinase, putative	S.X.	H.G.	Please select
0.36	47.1	Contig3042_at	Contig3042	-	-	2e-12	At5g25370	PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)	S.X.	H.G.	Please select
0.35	45.1	Contig17096_at	Contig17096	-	-	7e-2	At5g24430	calcium-dependent protein kinase, putative / CDPK, putative	S.X.	H.G.	Please select
0.27	32.1	Contig6947_at	Contig6947	-	-	5e-14	At5g45620	26S proteasome regulatory subunit, putative (RPN9)	S.X.	H.G.	Please select
0.26	30.4	Contig13711_at	Contig13711	-	-	2e+0	At3g22942	AGG2 (G-PROTEIN GAMMA SUBUNIT 2)	S.X.	H.G.	Please select
0.26	30.4	HA03B13u_s_at	HA03B13u	-	-	8e-4	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	S.X.	H.G.	Please select
0.21	22.6	HVSMEl0020O13r2_s_at	HVSMEl0020O13r2	-	-	9e+0	At5g17150	-	S.X.	H.G.	Please select
0.12	10.4	HVSMEc0015C10r2_at	HVSMEc0015C10r2	-	-	1e-9	At5g06950	AHBP-1B	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.8	99.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.5	99.5	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
12.3	99.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
10.8	99.2	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
10.8	99.2	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds
10.7	99.2	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.1	98.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
7.9	98.7	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Contig17030_at	Contig17030	-	-	2e+0	At1g23074	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig6168_at	Contig6168	-	-	6e-2	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig10759_at	Contig10759	-	-	7e-1	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7607_at	Contig7607	-	-	2e-13	At1g53580	GLY3 (GLYOXALASE II 3)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4187_at	Contig4187	-	-	2e-7	At5g08380	AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig9522_at	Contig9522	-	-	5e-15	At5g05630	amino acid permease family protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig5734_at	Contig5734	-	-	7e+0	At4g37409	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig17746_at	Contig17746	-	-	2e+0	At5g54950	aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related	C.G.	S.X.	Please select
0.02	4e+0	32	Contig5163_at	Contig5163	-	-	6e-16	At2g31610	40S ribosomal protein S3 (RPS3A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g49410	835001	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	Gma.3762.2.S1_at	BG551036	-	-	1e-3	At3g17520	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	C.G.	S.X.	Please select
0.50	3e-146	519	Oryza sativa	Os.46660.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.22845.1.S1_at	DN485420	-	-	4e+0	At5g35470	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	7e-133	474	Triticum aestivum	Ta.14242.1.S1_at	BQ838975	-	-	5e+0	At2g29070	ubiquitin fusion degradation UFD1 family protein	C.G.	S.X.	Please select
0.03	6e-1	34	Vitis vinifera	1620649_at	AY427191.1	-	-	5e-1	At3g53550	-	C.G.	S.X.	Please select
0.40	1e-107	389	Zea mays	Zm.12749.1.S1_at	CF648846	-	-	2e-1	At1g58150	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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