Gene omics information

Query gene ID	Contig15369_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig15369_at	Contig15369	-	-	1e-4	At3g17609	HYH (HY5-HOMOLOG)	S.X.	H.G.	Please select
0.59	75.8	Contig8654_at	Contig8654	-	-	3e-90	At5g18620	CHR17 (CHROMATIN REMODELING FACTOR17)	S.X.	H.G.	Please select
0.47	62.2	Contig1673_s_at	Contig1673	-	-	3e-2	At4g18800	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D)	S.X.	H.G.	Please select
0.33	42.6	HD04E24u_at	HD04E24u	-	-	1e+0	At5g13790	AGL15 (AGAMOUS-LIKE 15)	S.X.	H.G.	Please select
0.29	35.5	Contig8626_at	Contig8626	-	-	3e+0	At3g05935	unknown protein	S.X.	H.G.	Please select
0.27	32.1	Contig15965_at	Contig15965	-	-	1e+0	At3g11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	S.X.	H.G.	Please select
0.26	30.4	Contig17478_at	Contig17478	-	-	2e+0	At2g17695	unknown protein	S.X.	H.G.	Please select
0.26	30.4	HS03H22u_at	HS03H22u	-	-	3e-1	At4g32900	aminoacyl-tRNA hydrolase	S.X.	H.G.	Please select
0.25	28.9	Contig11134_at	Contig11134	-	-	5e-1	At5g49210	unknown protein	S.X.	H.G.	Please select
0.24	27.2	Contig15529_at	Contig15529	-	-	7e-19	At5g39900	GTP binding / GTPase/ translation elongation factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.1	99.6	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
17.1	99.6	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
14.2	99.5	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.6	99.3	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
11.6	99.3	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
10.8	99.2	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.5	98.8	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.5	98.8	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.5	98.8	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.9	98.7	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-1	34	Contig5269_x_at	Contig5269	-	-	5e+0	At5g25750	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig4946_at	Contig4946	-	-	1e-5	At4g01060	CPL3 (CAPRICE-LIKE MYB3)	C.G.	S.X.	Please select
0.02	9e-1	34	Contig20307_at	Contig20307	-	-	6e+0	At5g65320	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.01	9e-1	34	Contig10599_at	Contig10599	-	-	5e-8	At4g28706	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig5269_s_at	Contig5269	-	-	5e+0	At5g25750	unknown protein	C.G.	S.X.	Please select
0.03	9e-1	34	Contig319_at	Contig319	-	-	2e-48	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.02	9e-1	34	Contig11396_at	Contig11396	-	-	4e+0	At2g46600	calcium-binding protein, putative	C.G.	S.X.	Please select
0.02	9e-1	34	Contig20976_at	Contig20976	-	-	6e+0	At4g18070	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig12944_at	Contig12944	-	-	2e-3	At1g44970	peroxidase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-4	48	Arabidopsis thaliana	At3g17609	821027	HYH (HY5-HOMOLOG)	F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	2e-7	57	Glycine max	Gma.8537.1.S1_at	L28004.1	TGACG-motif-binding factor	-	2e-19	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	C.G.	S.X.	Please select
0.39	5e-70	266	Oryza sativa	OsAffx.2569.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	5e-11	69	Populus trichocarpa	PtpAffx.79743.1.S1_at	CK095368	hypothetical protein	-	4e-38	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	4e-69	262	Triticum aestivum	TaAffx.38635.1.A1_at	BJ228820	-	-	3e+0	At5g61750	cupin family protein	C.G.	S.X.	Please select
0.18	7e-22	103	Vitis vinifera	1609930_at	CB340826	hypothetical LOC100243959	-	3e-24	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	C.G.	S.X.	Please select
0.03	8e-1	34	Zea mays	Zm.3081.2.A1_a_at	CF626654	heat shock protein1	-	4e-13	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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