Gene omics information

Query gene ID	Contig15357_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	Contig15357_at	Contig15357	-	-	3e-1	At1g24440	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.53	69.7	Contig5369_at	Contig5369	-	-	1e-1	At3g46150	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig7963_at	Contig7963	-	-	9e-12	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	S.X.	H.G.	Please select
0.36	47.1	Contig17106_at	Contig17106	-	-	5e+0	At1g26890	-	S.X.	H.G.	Please select
0.33	42.6	Contig18260_at	Contig18260	-	-	2e-15	At1g22150	SULTR1	S.X.	H.G.	Please select
0.32	40.3	HS17M12u_s_at	HS17M12u	-	-	4e+0	At3g23250	MYB15 (MYB DOMAIN PROTEIN 15)	S.X.	H.G.	Please select
0.26	30.4	Contig5368_at	Contig5368	-	-	2e+0	At3g46150	unknown protein	S.X.	H.G.	Please select
0.19	19.6	Contig15347_at	Contig15347	-	-	3e-2	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.6	99.9	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
24.5	99.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
23.8	99.8	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
14.6	99.5	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
13.0	99.4	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
12.8	99.4	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.6	99.4	GSM130799	control, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
11.8	99.3	GSM398268	HS41-1_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.0	99.1	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.9	98.7	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1128	Contig15357_s_at	Contig15357	-	-	3e-1	At1g24440	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.59	0	912	Contig15356_at	Contig15356	-	-	5e-1	At1g24440	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.03	5e-1	34	Contig19653_at	Contig19653	-	-	1e+0	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	C.G.	S.X.	Please select
0.02	5e-1	34	Contig15708_at	Contig15708	-	-	7e+0	At5g63480	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Contig11799_at	Contig11799	-	-	1e-1	At1g16640	transcriptional factor B3 family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Contig7736_at	Contig7736	-	-	2e-12	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	C.G.	S.X.	Please select
0.02	2e+0	32	AF474373_CDS-10_at	AF474373_CDS-10	-	-	3e+0	At5g03905	hesB-like domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig18099_at	Contig18099	-	-	5e-1	At5g15950	adenosylmethionine decarboxylase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig9342_at	Contig9342	-	-	7e-7	At2g22670	IAA8	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At1g24440	839060	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.CL1897Contig1_at	PsAffx.CL1897Contig1	-	-	2e+1	At4g09795	LCR13 (Low-molecular-weight cysteine-rich 13)	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	OsAffx.23340.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.24456.1.A1_at	CV258985	hypothetical protein	-	4e-1	At5g03780	TRFL10 (TRF-LIKE 10)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	6e-58	224	Triticum aestivum	Ta.9620.2.A1_at	BJ217452	-	-	6e-1	At2g27390	proline-rich family protein	C.G.	S.X.	Please select
0.04	2e-2	38	Vitis vinifera	1609542_at	CF568969	-	-	2e-1	At3g28230	-	C.G.	S.X.	Please select
0.09	3e-5	48	Zea mays	Zm.5955.1.A1_at	AY106096.1	hypothetical protein LOC100274034	-	7e-1	At3g27310	PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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