Gene omics information

Query gene ID	Contig15213_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig15213_at	Contig15213	-	-	1e-1	At4g27745	-	S.X.	H.G.	Please select
0.50	66.9	Contig12944_at	Contig12944	-	-	2e-3	At1g44970	peroxidase, putative	S.X.	H.G.	Please select
0.50	66.9	Contig10621_at	Contig10621	-	-	4e-1	At1g14315	-	S.X.	H.G.	Please select
0.50	66.9	Contig12308_at	Contig12308	-	-	1e-5	At3g23530	cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative	S.X.	H.G.	Please select
0.46	61.0	Contig5857_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	S.X.	H.G.	Please select
0.23	26.1	Contig1302_at	Contig1302	-	-	1e-5	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.7	99.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.1	98.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.2	98.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0	97.2	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.7	96.9	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
4.4	96.6	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.9	95.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.9	95.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.8	95.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	5e-153	539	Contig22190_s_at	Contig22190	-	-	4e-2	At4g27745	-	C.G.	S.X.	Please select
0.03	1e-2	40	Contig10932_at	Contig10932	-	-	8e-15	At4g27745	-	C.G.	S.X.	Please select
0.02	5e-2	38	Contig6539_s_at	Contig6539	-	-	2e+0	At5g03400	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	34	EBro08_SQ006_K22_at	EBro08_SQ006_K22	-	-	4e+0	At4g21970	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig15484_at	Contig15484	-	-	8e+0	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please select
0.01	8e-1	34	Contig10706_at	Contig10706	-	-	3e+0	At5g54360	zinc finger (C2H2 type) family protein-related	C.G.	S.X.	Please select
0.01	8e-1	34	Contig9131_s_at	Contig9131	-	-	3e+0	At5g51690	ACS12	C.G.	S.X.	Please select
0.03	8e-1	34	HVSMEb0012L22f_at	HVSMEb0012L22f	-	-	4e+0	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	C.G.	S.X.	Please select
0.02	8e-1	34	AF254799_CDS-2_at	AF254799_CDS-2	-	-	3e-2	At1g73190	TIP3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-1	38	Arabidopsis thaliana	At4g27745	3770406	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	9e-3	42	Glycine max	GmaAffx.30241.1.A1_at	BU550979	-	-	2e-8	At4g27745	-	C.G.	S.X.	Please select
0.38	1e-89	331	Oryza sativa	Os07g0584000	AK068081.1	-	Yippee-like protein CG15309	4e+0	At3g22510	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-2	40	Populus trichocarpa	PtpAffx.97650.1.S1_at	CV229139	hypothetical protein	-	1e-15	At4g27745	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.77	0	718	Triticum aestivum	Ta.9465.1.S1_at	CK213973	-	-	5e-1	At2g40110	yippee family protein	C.G.	S.X.	Please select
0.03	3e-2	38	Vitis vinifera	1621485_at	CB971472	hypothetical protein LOC100258793	-	2e-17	At2g40110	yippee family protein	C.G.	S.X.	Please select
0.04	1e-2	40	Zea mays	Zm.5188.1.S1_at	AW400008	protein yippee-like	-	6e-3	At4g27745	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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