CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig15180_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 87.1 Contig15180_at Contig15180 - - 2e-1 At1g57690 F-box family protein S.X. H.G.
0.61 78.7 HV_CEa0017M22f_at HV_CEa0017M22f - - 1e+1 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) S.X. H.G.
0.46 61.0 Contig23961_at Contig23961 - - 3e-1 At4g14450 unknown protein S.X. H.G.
0.43 56.4 Contig4560_at Contig4560 - - 2e-1 At1g29000 heavy-metal-associated domain-containing protein S.X. H.G.
0.38 49.5 Contig5175_at Contig5175 - - 4e-11 At5g19855 unknown protein S.X. H.G.
0.32 40.3 Contig11462_at Contig11462 - - 8e-5 At5g41770 crooked neck protein, putative / cell cycle protein, putative S.X. H.G.
0.27 32.1 Contig8715_at Contig8715 - - 5e-25 At3g50360 ATCEN2 (CENTRIN2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.4 98.5 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.8 98.3 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
6.2 98.0 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
6.0 97.9 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.9 97.9 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.5 97.6 GSM440962 Stressed lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress
5.4 97.5 GSM282024 Malting_day4_Merit_rep2 GSE11200 Expression data from malting barley seeds
5.2 97.4 GSM282023 Malting_day4_Merit_rep3 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-6 54 HT09C19u_at HT09C19u - - 4e+0 At5g51810 GA20OX2 (GIBBERELLIN 20 OXIDASE 2) C.G. S.X.
0.02 2e-2 40 Contig11834_at Contig11834 - - 2e+0 At3g51220 unknown protein C.G. S.X.
0.01 1e+0 34 Contig5948_at Contig5948 - - 6e-2 At1g07010 calcineurin-like phosphoesterase family protein C.G. S.X.
0.02 1e+0 34 Contig9123_at Contig9123 - - 2e+0 At1g68725 AGP19 (ARABINOGALACTAN-PROTEIN 19) C.G. S.X.
0.01 5e+0 32 Contig12323_at Contig12323 - - 3e-20 At4g33110 coclaurine N-methyltransferase, putative C.G. S.X.
0.01 5e+0 32 Contig26421_at Contig26421 - - 2e+0 At4g13150 unknown protein C.G. S.X.
0.02 5e+0 32 Contig25664_at Contig25664 - - 1e+1 At5g16800 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.01 5e+0 32 Contig24145_at Contig24145 - - 1e-1 At1g33100 MATE efflux family protein C.G. S.X.
0.01 5e+0 32 Contig13493_at Contig13493 - - 2e-7 At5g64220 calmodulin-binding protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At1g57690 842145 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.02 8e-1 36 Glycine max GmaAffx.51388.1.S1_at BQ453594 - - 8e-1 At3g55390 integral membrane family protein C.G. S.X.
0.10 2e-18 95 Oryza sativa Os11g0180600 BP184957 - Type III restriction enzyme, res subunit familyprotein 1e+0 At4g16800 enoyl-CoA hydratase, putative C.G. S.X.
0.02 2e-1 38 Populus trichocarpa PtpAffx.2037.1.A1_s_at CK094301 hypothetical protein - 1e+0 At5g30341 unknown protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.114121.1.S1_at CA598349 - - 7e-1 At5g43910 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1620030_at CF210795 hypothetical LOC100264164 - 2e-5 At1g53210 sodium/calcium exchanger family protein / calcium-binding EF hand family protein C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.370.1.A1_at AI673868 - - 3e+0 At2g42610 LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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