CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig15164_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 90.8 Contig15164_at Contig15164 - - 8e-3 At4g39950 CYP79B2 S.X. H.G.
0.35 45.1 HV_CEa0012K03r2_x_at HV_CEa0012K03r2 - - 3e+0 At2g07215 unknown protein S.X. H.G.
0.35 45.1 Contig22276_at Contig22276 - - 1e+0 At3g50780 - S.X. H.G.
0.35 45.1 Contig16782_at Contig16782 - - 1e+0 At1g27000 bZIP family transcription factor S.X. H.G.
0.32 40.3 HVSMEk0015D16r2_at HVSMEk0015D16r2 - - 2e-1 At3g02500 unknown protein S.X. H.G.
0.30 37.0 Contig3976_at Contig3976 - - 5e+0 At5g33330 RNase H domain-containing protein S.X. H.G.
0.27 32.1 HT10K14u_at HT10K14u - - 1e-6 At1g09230 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.22 24.2 Contig13056_at Contig13056 - - 4e-1 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) S.X. H.G.
0.21 22.6 U08169_at U08169 - - 9e+0 At4g30070 LCR59 (Low-molecular-weight cysteine-rich 59) S.X. H.G.
0.19 19.6 Contig13274_at Contig13274 - - 9e-3 At1g71690 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.6 99.9 GSM282024 Malting_day4_Merit_rep2 GSE11200 Expression data from malting barley seeds
26.5 99.8 GSM68891 3 h control replicate 3 GSE3097 Barley1 salinity stress study
25.2 99.8 GSM282020 Malting_day4_Legacy_rep 3 GSE11200 Expression data from malting barley seeds
19.1 99.7 GSM71150 OWB-R unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
18.1 99.7 GSM282021 Malting_day4_Legacy_rep 2 GSE11200 Expression data from malting barley seeds
15.6 99.6 GSM282039 Malting_day4_Morex_rep2 GSE11200 Expression data from malting barley seeds
15.0 99.5 GSM68903 27 h control replicate3 GSE3097 Barley1 salinity stress study
14.8 99.5 GSM238439 Embryo 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
13.1 99.4 GSM282035 Malting_day4_Morex_rep1 GSE11200 Expression data from malting barley seeds
12.4 99.4 GSM282023 Malting_day4_Merit_rep3 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 2e-134 478 Contig15165_s_at Contig15165 - - 2e+0 At3g28460 unknown protein C.G. S.X.
0.02 1e-2 40 Contig12571_at Contig12571 - - 3e+0 At5g37520 unknown protein C.G. S.X.
0.02 2e-1 36 Contig5345_s_at Contig5345 - - 3e+0 At4g39730 lipid-associated family protein C.G. S.X.
0.02 2e-1 36 Contig16816_at Contig16816 - - 5e+0 At5g25940 early nodulin-related C.G. S.X.
0.02 2e-1 36 Contig14666_s_at Contig14666 - - 7e+0 At2g06095 unknown protein C.G. S.X.
0.02 2e-1 36 Contig14666_at Contig14666 - - 7e+0 At2g06095 unknown protein C.G. S.X.
0.01 2e-1 36 Contig12594_at Contig12594 - - 3e+0 At5g11990 proline-rich family protein C.G. S.X.
0.01 2e-1 36 Contig8194_at Contig8194 - - 2e-7 At4g37210 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.02 2e-1 36 Contig5345_at Contig5345 - - 3e+0 At4g39730 lipid-associated family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 8e-3 42 Arabidopsis thaliana At4g39950 830154 CYP79B2 Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. - - - C.G. S.X.
0.03 2e-1 38 Glycine max GmaAffx.40177.1.S1_at BQ253291 - - 1e-2 At5g24890 unknown protein C.G. S.X.
0.19 2e-32 141 Oryza sativa Os03g0570100 AK119569.1 - Cytochrome P450 79A1 (EC 1.14.13.41) (TyrosineN-monooxygenase) (Cytochrome P450Tyr) 9e-1 At5g35917 CYP79A3P C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.212064.1.S1_x_at pmrna23677 hypothetical protein - 1e-1 At1g75580 auxin-responsive protein, putative C.G. S.X.
0.05 5e-1 36 Triticum aestivum TaAffx.82306.2.S1_at CA676537 - - 4e+0 At2g17305 - C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1620508_at BQ797042 similar to cysteine protease Cp5 - 3e-2 At4g08330 unknown protein C.G. S.X.
0.02 1e-2 40 Zea mays Zm.19077.1.A1_at CO526103 - - 7e+0 At3g43722 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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