Gene omics information

Query gene ID	Contig15145_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig15145_at	Contig15145	-	-	1e-61	At3g09920	PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)	S.X.	H.G.	Please select
0.91	98.1	HV_CEa0012H15r2_at	HV_CEa0012H15r2	-	-	4e+0	At1g11450	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.91	98.1	Contig9426_at	Contig9426	-	-	2e-2	At5g51340	unknown protein	S.X.	H.G.	Please select
0.91	98.1	Contig21454_x_at	Contig21454	-	-	4e+0	At4g01265	raffinose synthase family protein / seed imbibition protein-related	S.X.	H.G.	Please select
0.83	94.0	Contig23898_at	Contig23898	-	-	4e-1	At2g01610	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.57	74.9	Contig21304_s_at	Contig21304	-	-	3e+0	At5g10390	histone H3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	98.0	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.0	97.9	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0	97.9	GSM419980	Awn_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.0	97.9	GSM440971	Control awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.9	97.9	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.5	97.6	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.3	97.4	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3	97.4	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.3	97.4	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-15	83	Contig5913_s_at	Contig5913	-	-	4e+0	At4g21780	unknown protein	C.G.	S.X.	Please select
0.09	2e-15	83	Contig5912_at	Contig5912	-	-	1e-16	At1g60890	phosphatidylinositol-4-phosphate 5-kinase family protein	C.G.	S.X.	Please select
0.04	4e-7	56	HY09G09u_at	HY09G09u	-	-	1e+0	At1g15045	-	C.G.	S.X.	Please select
0.02	1e-1	38	Contig20765_at	Contig20765	-	-	1e-4	At3g05510	phospholipid/glycerol acyltransferase family protein	C.G.	S.X.	Please select
0.02	4e-1	36	Contig5240_at	Contig5240	-	-	4e-5	At2g43030	ribosomal protein L3 family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig10960_at	Contig10960	-	-	8e-3	At5g23580	CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig7160_at	Contig7160	-	-	2e+0	At1g76040	CPK29	C.G.	S.X.	Please select
0.01	2e+0	34	Contig9955_at	Contig9955	-	-	3e-1	At2g23310	ATRER1C1	C.G.	S.X.	Please select
0.01	2e+0	34	Contig11965_at	Contig11965	-	-	2e+0	At4g19640	ARA7	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	1e-61	238	Arabidopsis thaliana	At3g09920	820151	PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)	F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:amino acid metabolic process, carbohydrate metabolic process;C:cytosol, nucleus, membrane;OMBPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	3e-78	293	Glycine max	Gma.6349.1.S1_at	BQ613037	-	-	6e-69	At3g09920	PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)	C.G.	S.X.	Please select
0.43	0	1084	Oryza sativa	Os02g0822500	AK065905.1	-	Junctophilin 2 (Junctophilin type 2) (JP-2)	5e-41	At3g09920	PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.29	4e-34	147	Populus trichocarpa	PtpAffx.4652.1.S1_at	CV270075	-	-	9e-65	At3g09920	PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	2e-124	446	Triticum aestivum	TaAffx.29233.1.A1_at	BE492300	-	-	1e+0	At1g76825		C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1622384_at	CF205158.1	-	-	1e-3	At4g01590	unknown protein	C.G.	S.X.	Please select
0.15	4e-7	56	Zea mays	Zm.7464.1.A1_at	CK826735	phosphatidylinositol-4-phosphate 5-kinase 9	-	2e-4	At1g77740	1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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