Gene omics information

Query gene ID	Contig1512_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.31	38.6	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please select
0.77	90.8	Contig8444_at	Contig8444	-	-	3e-6	At2g28250	NCRK	S.X.	H.G.	Please select
0.67	84.7	Contig19064_at	Contig19064	-	-	3e+0	At4g09460	ATMYB6	S.X.	H.G.	Please select
0.59	75.8	Contig1454_at	Contig1454	-	-	4e-52	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	S.X.	H.G.	Please select
0.55	72.0	HVSMEk0023O04r2_at	HVSMEk0023O04r2	-	-	8e-2	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	S.X.	H.G.	Please select
0.38	49.5	Contig12767_at	Contig12767	-	-	2e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	98.3	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.9	97.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	1427	Contig1507_at	Contig1507	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.66	0	1055	Contig1508_s_at	Contig1508	-	-	2e-158	At5g62700	TUB3	C.G.	S.X.	Please select
0.67	0	989	Contig1510_at	Contig1510	-	-	2e-143	At5g62690	TUB2	C.G.	S.X.	Please select
0.67	0	989	Contig1510_s_at	Contig1510	-	-	2e-143	At5g62690	TUB2	C.G.	S.X.	Please select
0.58	0	878	Contig1511_s_at	Contig1511	-	-	2e-103	At5g62690	TUB2	C.G.	S.X.	Please select
0.58	0	848	Contig1509_s_at	Contig1509	-	-	8e-177	At5g62700	TUB3	C.G.	S.X.	Please select
0.60	0	779	Contig1503_s_at	Contig1503	-	-	2e-168	At5g62700	TUB3	C.G.	S.X.	Please select
0.66	0	648	Contig1506_s_at	Contig1506	-	-	8e-96	At5g23860	TUB8	C.G.	S.X.	Please select
0.32	2e-154	545	Contig1516_s_at	Contig1516	-	-	3e-72	At5g62700	TUB3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	0	735	Arabidopsis thaliana	At5g12250	831100	TUB6 (BETA-6 TUBULIN)	Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.59	0	761	Glycine max	Gma.2242.1.S1_at	BQ627543	beta-tubulin	-	5e-175	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.66	0	1316	Oryza sativa	Os01g0805900	D30716.1	-	Tubulin beta-2 chain (Beta-2 tubulin)	0	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.59	6e-163	575	Populus trichocarpa	Ptp.5933.1.S1_x_at	CA927010	tubulin, beta chain /// tubulin, beta chain /// tubulin, beta chain	-	1e-165	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	2137	Triticum aestivum	Ta.214.1.S1_x_at	CK210896	beta-tubulin 5	-	2e-168	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.55	6e-175	613	Vitis vinifera	1607001_at	CF404264	hypothetical protein LOC100259087	-	0	At1g75780	TUB1	C.G.	S.X.	Please select
0.65	0	1441	Zea mays	Zm.7750.1.S1_at	L10633.1	beta-6 tubulin	-	1e-151	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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