Gene omics information

Query gene ID	Contig15126_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig15126_at	Contig15126	-	-	5e-2	At1g04590	-	S.X.	H.G.	Please select
0.75	89.5	Contig13274_at	Contig13274	-	-	9e-3	At1g71690	unknown protein	S.X.	H.G.	Please select
0.63	80.3	Contig19923_at	Contig19923	-	-	3e-1	At4g26950	unknown protein	S.X.	H.G.	Please select
0.59	75.8	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	S.X.	H.G.	Please select
0.57	74.9	Contig8495_at	Contig8495	-	-	2e-5	At2g24740	SDG21 (SET DOMAIN GROUP 21)	S.X.	H.G.	Please select
0.57	74.9	Contig1139_s_at	Contig1139	-	-	1e-19	At3g07110	60S ribosomal protein L13A (RPL13aA)	S.X.	H.G.	Please select
0.50	66.9	Contig20455_at	Contig20455	-	-	2e+0	At5g48220	indole-3-glycerol phosphate synthase, putative	S.X.	H.G.	Please select
0.50	66.9	Contig14264_at	Contig14264	-	-	2e+0	At1g48780	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig1434_s_at	Contig1434	-	-	2e-1	At5g58580	ATL63 (ARABIDOPSIS TÓ	S.X.	H.G.	Please select
0.48	63.2	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.9	99.7	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
16.9	99.6	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.4	99.5	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
13.8	99.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.9	99.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.1	98.9	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
7.1	98.4	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.4	97.5	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-2	40	Contig12127_s_at	Contig12127	-	-	2e-1	At5g26617	-	C.G.	S.X.	Please select
0.02	1e-1	38	rbah11g06_s_at	rbah11g06	-	-	1e+0	At3g21860	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig11580_at	Contig11580	-	-	3e-4	At3g08040	FRD3 (FERRIC REDUCTASE DEFECTIVE 3)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig3932_at	Contig3932	-	-	2e-3	At1g16230	syntaxin-related family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig24782_at	Contig24782	-	-	3e-11	At3g19340	-	C.G.	S.X.	Please select
0.02	6e+0	32	HVSMEg0009K07r2_s_at	HVSMEg0009K07r2	-	-	4e+0	At5g22520	unknown protein	C.G.	S.X.	Please select
0.01	6e+0	32	Contig8499_at	Contig8499	-	-	3e-7	At1g03280	transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein	C.G.	S.X.	Please select
0.01	6e+0	32	Contig6925_at	Contig6925	-	-	2e-3	At1g17620	-	C.G.	S.X.	Please select
0.01	6e+0	32	Contig4516_at	Contig4516	-	-	5e-11	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	5e-2	40	Arabidopsis thaliana	At1g04590	839484	-	F:molecular_function unknown;P:unknown;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	GmaAffx.4082.1.S1_at	BM270152	-	-	3e-5	At1g68100	IAR1 (IAA-ALANINE RESISTANT 1)	C.G.	S.X.	Please select
0.36	6e-114	412	Oryza sativa	Os12g0123100	AK070039.1	-	-	3e-9	At1g04590	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-1	38	Populus trichocarpa	PtpAffx.69655.1.A1_at	CV247857	-	-	1e-1	At3g45960	ATEXLA3 (arabidopsis thaliana expansin-like a3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	3e-133	476	Triticum aestivum	Ta.7107.1.A1_at	BJ321016	-	-	1e+0	At4g17160	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A)	C.G.	S.X.	Please select
0.02	2e-4	46	Vitis vinifera	1619751_at	CB341549	hypothetical protein LOC100264878	-	5e-15	At4g14560	IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)	C.G.	S.X.	Please select
0.22	2e-52	206	Zea mays	Zm.3082.1.S1_at	CF638210	hypothetical protein LOC100273688	-	2e-1	At4g21190	emb1417 (embryo defective 1417)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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