CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig15086_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig15086_at Contig15086 - - 6e-4 At5g40570 surfeit locus protein 2 family protein / SURF2 family protein S.X. H.G.
0.83 94.0 Contig15087_at Contig15087 - - 8e-3 At5g14390 - S.X. H.G.
0.83 94.0 Contig1924_at Contig1924 - - 3e-1 At4g25020 KOW domain-containing protein / D111/G-patch domain-containing protein S.X. H.G.
0.73 88.7 Contig17040_at Contig17040 - - 2e-2 At3g60490 AP2 domain-containing transcription factor TINY, putative S.X. H.G.
0.63 80.3 Contig15990_at Contig15990 - - 7e+0 At2g14910 unknown protein S.X. H.G.
0.53 69.7 EBpi07_SQ002_E06_at EBpi07_SQ002_E06 - - 2e+0 At1g44835 YbaK/prolyl-tRNA synthetase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.1 99.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.7 99.0 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.4 99.0 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.8 98.9 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.8 98.6 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.3 98.1 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.0 97.9 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.4 97.5 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.0 97.2 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.5 96.7 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 40 Contig5582_s_at Contig5582 - - 1e+0 At3g58900 F-box family protein C.G. S.X.
0.02 2e-2 40 Contig24654_at Contig24654 - - 1e-1 At1g28460 AGL59 (AGAMOUS-LIKE 59) C.G. S.X.
0.02 2e-2 40 Contig8658_at Contig8658 - - 1e-1 At5g46890 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.01 8e-2 38 Contig5249_at Contig5249 - - 2e-1 At1g77850 ARF17 (AUXIN RESPONSE FACTOR 17) C.G. S.X.
0.02 8e-2 38 Contig2714_at Contig2714 - - 2e-16 At5g01600 ATFER1 C.G. S.X.
0.01 8e-2 38 Contig4778_at Contig4778 - - 6e-8 At3g53710 AGD6 C.G. S.X.
0.01 8e-2 38 Contig4147_at Contig4147 - - 5e-6 At5g49720 ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1) C.G. S.X.
0.02 8e-2 38 Contig20017_at Contig20017 - - 3e+0 At1g66410 CAM4 (calmodulin 4) C.G. S.X.
0.01 8e-2 38 Contig10075_at Contig10075 - - 2e-1 At1g08370 DCP1 (decapping 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-4 46 Arabidopsis thaliana At5g40570 834055 surfeit locus protein 2 family protein / SURF2 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF - - - C.G. S.X.
0.06 1e-2 42 Glycine max GmaAffx.78011.1.S1_at BG551615 - - 5e-5 At5g40570 surfeit locus protein 2 family protein / SURF2 family protein C.G. S.X.
0.44 3e-121 436 Oryza sativa Os04g0480400 AK068996.1 - Surfeit locus 2 family protein 4e-2 At4g27310 zinc finger (B-box type) family protein C.G. S.X.
0.05 4e-3 44 Populus trichocarpa PtpAffx.1852.1.S1_at CA823172 hypothetical protein - 2e-9 At5g40570 surfeit locus protein 2 family protein / SURF2 family protein C.G. S.X.
0.42 2e-164 579 Triticum aestivum TaAffx.43704.1.S1_at CA598448 - - 2e-1 At1g10830 sodium symporter-related C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1621554_s_at CF511998 similar to Os03g0670700 - 4e-6 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.34 3e-93 341 Zea mays Zm.6000.1.S1_at BG265807 surfeit locus protein 2 containing protein - 9e-3 At1g20470 auxin-responsive family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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