Gene omics information

Query gene ID	Contig15070_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig15070_at	Contig15070	-	-	1e-2	At4g10810	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig4647_s_at	Contig4647	-	-	3e-3	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	S.X.	H.G.	Please select
0.50	66.9	Contig16867_at	Contig16867	-	-	7e-9	At3g02690	integral membrane family protein	S.X.	H.G.	Please select
0.50	66.9	Contig4647_at	Contig4647	-	-	3e-3	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	S.X.	H.G.	Please select
0.25	28.9	Contig5664_at	Contig5664	-	-	1e-2	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	S.X.	H.G.	Please select
0.18	18.2	Contig5226_at	Contig5226	-	-	1e-1	At1g79790	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.6	99.8	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
22.9	99.8	GSM372942	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
18.6	99.7	GSM372961	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
16.0	99.6	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.2	99.4	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.1	99.4	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.6	99.4	GSM372943	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.3	99.4	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.3	99.4	GSM372950	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.6	99.3	GSM372972	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	0	680	EBro02_SQ006_O21_s_at	EBro02_SQ006_O21	-	-	1e-2	At4g10810	unknown protein	C.G.	S.X.	Please select
0.03	3e-2	38	Contig23245_at	Contig23245	-	-	5e-4	At5g60550	GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2)	C.G.	S.X.	Please select
0.03	4e-1	34	rbags13c11_at	rbags13c11	-	-	1e+0	At1g06475	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Contig3054_at	Contig3054	-	-	3e-5	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.03	4e-1	34	Contig3054_s_at	Contig3054	-	-	3e-5	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig7304_s_at	Contig7304	-	-	2e+0	At5g43110	APUM14 (Arabidopsis Pumilio 14)	C.G.	S.X.	Please select
0.03	2e+0	32	HVSMEm0011G21r2_at	HVSMEm0011G21r2	-	-	3e-7	At3g27060	TSO2 (TSO meaning 'ugly' in Chinese)	C.G.	S.X.	Please select
0.04	2e+0	32	EBro04_SQ004_C02a_at	EBro04_SQ004_C02a	-	-	6e-1	At1g69760	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig9612_s_at	Contig9612	-	-	7e-1	At5g09540	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-2	40	Arabidopsis thaliana	At4g10810	826677	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	Gma.8911.3.S1_at	BU091546	-	-	2e-48	At1g80930	MIF4G domain-containing protein / MA3 domain-containing protein	C.G.	S.X.	Please select
0.03	1e-1	38	Oryza sativa	Os11g0602400	AK061077.1	-	-	2e-10	At5g60230	SEN2 (splicing endonuclease 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.95499.1.A1_at	CV243725	-	-	3e-1	At5g24890	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.60	4e-86	317	Triticum aestivum	TaAffx.56885.1.S1_x_at	CA641842	-	-	2e+0	At4g10810	unknown protein	C.G.	S.X.	Please select
0.06	1e+0	32	Vitis vinifera	1609341_s_at	CF202467.1	hypothetical protein LOC100265359	-	2e-3	At5g40630	ubiquitin family protein	C.G.	S.X.	Please select
0.04	6e+0	30	Zea mays	ZmAffx.62.1.A1_at	AI665108	coronatine-insensitive protein 1	-	3e+0	At2g01370	DNA-binding storekeeper protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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