Gene omics information

Query gene ID	Contig14966_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig14966_at	Contig14966	-	-	7e-23	At3g54190	-	S.X.	H.G.	Please select
0.29	35.5	Contig7546_s_at	Contig7546	-	-	1e+0	At1g63950	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.27	32.1	Contig8530_at	Contig8530	-	-	1e-5	At4g33410	signal peptide peptidase family protein	S.X.	H.G.	Please select
0.25	28.9	Contig1813_s_at	Contig1813	-	-	1e-121	At5g55190	RAN3 (RAN GTPASE 3)	S.X.	H.G.	Please select
0.19	19.6	Contig9136_at	Contig9136	-	-	1e-5	At3g51140	-	S.X.	H.G.	Please select
0.15	14.1	Contig5696_at	Contig5696	-	-	7e-3	At5g48335	unknown protein	S.X.	H.G.	Please select
0.14	12.9	Contig2811_at	Contig2811	-	-	3e-1	At1g21550	calcium-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.7	98.9	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
7.9	98.7	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
7.2	98.5	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.9	95.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.6	95.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	8e-18	91	Contig16298_at	Contig16298	-	-	2e-7	At2g38630	-	C.G.	S.X.	Please select
0.20	1e-13	77	Contig3161_at	Contig3161	-	-	3e-19	At3g54190	-	C.G.	S.X.	Please select
0.02	3e-2	40	Contig4776_s_at	Contig4776	-	-	2e-13	At5g64200	ATSC35	C.G.	S.X.	Please select
0.02	1e-1	38	Contig12544_s_at	Contig12544	-	-	2e+1	At5g03100	F-box family protein	C.G.	S.X.	Please select
0.02	1e-1	38	Contig12544_at	Contig12544	-	-	2e+1	At5g03100	F-box family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig5256_at	Contig5256	-	-	3e-11	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig8532_at	Contig8532	-	-	1e-5	At5g16120	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig1867_at	Contig1867	-	-	1e-2	At1g14540	anionic peroxidase, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Contig13889_at	Contig13889	-	-	3e-2	At3g08910	DNAJ heat shock protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	7e-23	109	Arabidopsis thaliana	At3g54190	824586	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	6e-15	83	Glycine max	GmaAffx.91578.1.S1_s_at	CF807303	-	-	6e-74	At3g54190	-	C.G.	S.X.	Please select
0.56	0	835	Oryza sativa	Os12g0498300	CR280249	-	WD40-like domain containing protein	2e-22	At3g54190	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	7e-33	143	Populus trichocarpa	PtpAffx.215580.1.S1_at	pmrna29857	hypothetical protein	-	7e-69	At3g54190	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.84	0	2393	Triticum aestivum	Ta.7270.1.S1_at	BT009258.1	-	-	5e-24	At2g38630	-	C.G.	S.X.	Please select
0.05	3e-13	75	Vitis vinifera	1617845_at	CD800649	hypothetical protein LOC100263968	-	4e-35	At2g38630	-	C.G.	S.X.	Please select
0.53	2e-107	389	Zea mays	Zm.3436.1.A1_at	AI964659	hypothetical protein LOC100217002	-	1e-20	At3g54190	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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