Gene omics information

Query gene ID	Contig14949_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig14949_at	Contig14949	-	-	3e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	S.X.	H.G.	Please select
0.61	78.7	Contig13965_at	Contig13965	-	-	7e+0	At5g55056	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig21865_at	Contig21865	-	-	9e-1	At5g45870	Bet v I allergen family protein	S.X.	H.G.	Please select
0.57	74.9	Contig13428_at	Contig13428	-	-	6e-5	At3g17160	unknown protein	S.X.	H.G.	Please select
0.50	66.9	HX07O15r_at	HX07O15r	-	-	4e+0	At5g05470	EIF2 ALPHA	S.X.	H.G.	Please select
0.40	53.1	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
101.1	100.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
53.5	100.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
31.0	99.9	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
31.0	99.9	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
18.6	99.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.4	99.6	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.8	99.5	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
13.4	99.4	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
11.0	99.2	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.5	99.0	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-5	48	Contig3511_at	Contig3511	-	-	3e-1	At4g28240	wound-responsive protein-related	C.G.	S.X.	Please select
0.07	1e-2	40	Contig17317_at	Contig17317	-	-	4e+0	At4g15030	unknown protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig16657_at	Contig16657	-	-	2e+0	At3g07195	proline-rich family protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig14563_at	Contig14563	-	-	2e+0	At5g60680	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig8293_at	Contig8293	-	-	1e-1	At3g06300	AT-P4H-2 (A. THALIANA P4H ISOFORM 2)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig7484_at	Contig7484	-	-	1e-5	At1g67730	YBR159	C.G.	S.X.	Please select
0.02	2e-1	36	Contig13865_at	Contig13865	-	-	2e-10	At3g10220	tubulin folding cofactor B	C.G.	S.X.	Please select
0.04	2e-1	36	Contig3515_x_at	Contig3515	-	-	2e-1	At4g17680	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.09	2e-1	36	Contig11923_at	Contig11923	-	-	3e-1	At4g28240	wound-responsive protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-2	40	Arabidopsis thaliana	At3g19100	821445	calcium-dependent protein kinase, putative / CDPK, putative	F:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MOPFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	GmaAffx.86578.2.S1_at	AW507708	-	-	1e-2	At5g61650	CYCP4	C.G.	S.X.	Please select
0.23	2e-14	81	Oryza sativa	Os04g0635000	AK062619.1	-	Conserved hypothetical protein	4e+0	At4g25130	peptide methionine sulfoxide reductase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.75999.1.A1_at	CV251974	-	-	6e+0	At5g55970	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	2e-74	280	Triticum aestivum	TaAffx.16214.1.S1_at	CD492011	-	-	5e+0	At3g56260	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Vitis vinifera	1607815_at	CB974638	-	-	5e+0	At4g33355	lipid binding	C.G.	S.X.	Please select
0.16	6e-20	97	Zea mays	Zm.10110.1.A1_at	BM380771	-	-	2e+0	At5g58470	TAF15b (TBP-ASSOCIATED FACTOR 15b)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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