CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig14946_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 75.8 Contig14946_at Contig14946 - - 2e-1 At2g46340 SPA1 (SUPPRESSOR OF PHYA-105 1) S.X. H.G.
0.55 72.0 Contig4400_s_at Contig4400 - - 8e-3 At5g52050 MATE efflux protein-related S.X. H.G.
0.40 53.1 HVSMEf0001F23r2_x_at HVSMEf0001F23r2 - - 9e+0 At4g26030 transcription factor S.X. H.G.
0.38 49.5 Contig3802_at Contig3802 - - 3e-76 At5g11770 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial S.X. H.G.
0.31 38.6 Contig3801_at Contig3801 - - 4e-26 At1g69840 band 7 family protein S.X. H.G.
0.23 26.1 HV12C23u_x_at HV12C23u - - 5e+0 At5g35475 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.8 99.7 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.7 99.7 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
15.5 99.6 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.6 99.4 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.6 99.3 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.5 99.3 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.2 99.2 GSM261069 Albina f-17 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.1 99.2 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.6 99.2 GSM261078 Albina e-16 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.5 99.2 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 36 Contig668_at Contig668 - - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.02 4e-1 36 Contig216_at Contig216 - - 5e+0 At5g40040 60S acidic ribosomal protein P2 (RPP2E) C.G. S.X.
0.02 4e-1 36 HV13D09r_at HV13D09r - - 4e+0 At5g36960 unknown protein C.G. S.X.
0.02 4e-1 36 Contig216_x_at Contig216 - - 5e+0 At5g40040 60S acidic ribosomal protein P2 (RPP2E) C.G. S.X.
0.02 4e-1 36 Contig146_s_at Contig146 - - 6e-1 At4g27810 unknown protein C.G. S.X.
0.01 2e+0 34 Contig20810_at Contig20810 - - 1e+0 At5g06070 RBE (RABBIT EARS) C.G. S.X.
0.01 2e+0 34 Contig15634_at Contig15634 - - 5e-4 At4g15490 UGT84A3 C.G. S.X.
0.01 2e+0 34 Contig18293_at Contig18293 - - 1e-51 At4g22910 FZR2 (FIZZY-RELATED 2) C.G. S.X.
0.01 2e+0 34 Contig15448_at Contig15448 - - 6e-11 At4g32551 LUG (LEUNIG) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 38 Arabidopsis thaliana At2g46340 819242 SPA1 (SUPPRESSOR OF PHYA-105 1) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light. - - - C.G. S.X.
0.13 6e-15 83 Glycine max GmaAffx.78418.1.S1_at BM953906 - - 1e-7 At4g11110 SPA2 (SPA1-RELATED 2) C.G. S.X.
0.27 0 1021 Oryza sativa Os05g0571000 AK111749.1 - Protein kinase-like domain containing protein 4e-5 At4g11110 SPA2 (SPA1-RELATED 2) C.G. S.X.
0.11 2e-8 61 Populus trichocarpa PtpAffx.200384.1.S1_at pmrna767 hypothetical protein - 9e-26 At4g11110 SPA2 (SPA1-RELATED 2) C.G. S.X.
0.45 0 1245 Triticum aestivum TaAffx.122903.1.S1_at CA596212 - - 2e-1 At1g01305 unknown protein C.G. S.X.
0.08 3e-7 56 Vitis vinifera 1622268_at CF372312 - - 9e-16 At4g11110 SPA2 (SPA1-RELATED 2) C.G. S.X.
0.02 9e-2 38 Zea mays Zm.14362.1.A1_at CO526845 hypothetical protein LOC100216856 - 8e-4 At3g15354 SPA3 (SPA1-RELATED 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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